METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2001_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_11 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_11 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_11 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2001_11 | dssp | THIS_month:psum | 77.6 | 63 | 60 | 30 | 32 | 73 | 78 | 72.0 | 85.2 | 73.2 | 63.8 | 1.7 | 0.33 | 0.33 | 0.32 | 0.65 | 0.70 | 0.54 | 85.7 | 9.5 | 3.7 |
sec | 2001_11 | dssp | 1ea6:A | 91.8 | 95 | 91 | 95 | 87 | 87 | 94 | 98.8 | 100 | 100 | 97 | 0.0 | 0.71 | 0.72 | 0.71 | 0.90 | 0.88 | 0.83 | 100.0 | 1.0 | 2.0 |
sec | 2001_11 | dssp | 1ea6:B | 84.7 | 75 | 91 | 95 | 88 | 85 | 78 | 83.7 | 78 | 100 | 76 | 0.0 | 0.58 | 0.58 | 0.59 | 0.75 | 0.88 | 0.68 | 0.0 | 5.0 | 2.0 |
sec | 2001_11 | dssp | 1go9:A | 82.9 | 82 | 96 | 0 | 0 | 85 | 50 | 72.6 | 75 | 100 | 60 | 0.0 | 0.28 | 0.32 | 0.24 | 0.56 | 1.0 | 0.56 | 100.0 | 12.0 | 0.00 |
sec | 2001_11 | dssp | 1goe:A | 82.9 | 82 | 96 | 0 | 0 | 85 | 50 | 72.6 | 75 | 100 | 60 | 0.0 | 0.28 | 0.32 | 0.24 | 0.56 | 1.0 | 0.56 | 100.0 | 12.0 | 0.00 |
sec | 2001_11 | dssp | 1hdl:A | 56.4 | 53 | 68 | 0 | 0 | 66 | 48 | 51.5 | 65 | 0 | 34 | 3.6 | 0.04 | 0.04 | 0.04 | 0.18 | -0.02 | 0.21 | 100.0 | 12.0 | 1.0 |
sec | 2001_11 | dssp | 1hek:A | 71.6 | 88 | 78 | 0 | 0 | 50 | 79 | 71.2 | 95 | 100 | 51 | 0.0 | 0.29 | 0.33 | 0.25 | 0.61 | 1.0 | 0.43 | 0.0 | 6.0 | 9.0 |
sec | 2001_11 | dssp | 1i26:A | 82.4 | 0 | 0 | 16 | 50 | 96 | 84 | 49.5 | 100 | 22 | 55 | 0.0 | 0.05 | 0.04 | 0.08 | 1.0 | 0.21 | 0.21 | 100.0 | 0.00 | 11.0 |
sec | 2001_11 | dssp | 1jo6:A | 53.3 | 62 | 29 | 0 | 0 | 51 | 86 | 39.5 | 60 | 100 | 37 | 0.0 | 0.07 | 0.09 | 0.04 | 0.23 | 1.0 | 0.10 | 100.0 | 20.0 | 13.0 |
sec | 2001_11 | dssp | 1jrj:A | 82.1 | 75 | 94 | 0 | 0 | 93 | 70 | 86.4 | 87 | 100 | 84 | 0.0 | 0.37 | 0.38 | 0.36 | 0.66 | 1.0 | 0.66 | 100.0 | 12.0 | 0.00 |
sec | 2001_11 | dssp | 1jyo:E | 67.6 | 90 | 65 | 16 | 33 | 52 | 83 | 62.2 | 77 | 12 | 56 | 10.7 | 0.18 | 0.16 | 0.20 | 0.44 | 0.16 | 0.52 | 100.0 | 19.0 | 5.0 |
sec | 2001_11 | dssp | 1jyo:F | 66.3 | 90 | 63 | 20 | 25 | 50 | 88 | 61.2 | 82 | 15 | 49 | 9.6 | 0.18 | 0.17 | 0.20 | 0.44 | 0.15 | 0.52 | 100.0 | 20.0 | 1.0 |
sec | 2001_11 | dssp | 1k5j:B | 93.9 | 0 | 0 | 95 | 95 | 92 | 92 | 98.5 | 100 | 100 | 96 | 0.0 | 0.66 | 0.66 | 0.66 | 1.0 | 0.87 | 0.87 | 100.0 | 0.00 | 0.00 |
sec | 2001_11 | dssp | 1k5j:C | 84.8 | 0 | 0 | 94 | 81 | 71 | 90 | 72.7 | 100 | 76 | 67 | 0.0 | 0.40 | 0.39 | 0.41 | 1.0 | 0.69 | 0.69 | 100.0 | 0.00 | 9.0 |
sec | 2001_11 | dssp | 1k99:A | 85.7 | 100 | 79 | 0 | 0 | 67 | 100 | 87.9 | 100 | 100 | 72 | 0.0 | 0.51 | 0.48 | 0.54 | 0.73 | 1.0 | 0.73 | 100.0 | 14.0 | 0.00 |
sec | 2001_11 | dssp | THIS_month:psum | 77.6 | 63 | 60 | 30 | 32 | 73 | 78 | 72.0 | 85.2 | 73.2 | 63.8 | 1.7 | 0.33 | 0.33 | 0.32 | 0.65 | 0.70 | 0.54 | 85.7 | 9.5 | 3.7 |
sec | 2001_11 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_11 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_11 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |