METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2001_10 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_10 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_10 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_10 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2001_10 | dssp | THIS_month:psum | 66.0 | 64 | 54 | 39 | 46 | 69 | 77 | 54.9 | 54.1 | 73.3 | 54.5 | 2.1 | 1.0 | 0.22 | 1.8 | 0.42 | 0.67 | 0.38 | 83.3 | 11.3 | 3.3 |
sec | 2001_10 | dssp | 1e9k:A | 52.6 | 42 | 37 | 0 | 0 | 58 | 63 | 44.5 | 30 | 100 | 53 | 0.0 | 4.9 | 0.00 | 9.9 | 0.01 | 1.0 | 0.01 | 100.0 | 5.0 | 0.00 |
sec | 2001_10 | dssp | 1h7d:A | 57.1 | 100 | 23 | 0 | 0 | 52 | 100 | 29.7 | 53 | 100 | 28 | 0.0 | 0.19 | 0.29 | 0.10 | 0.38 | 1.0 | 0.31 | 100.0 | 32.0 | 10.0 |
sec | 2001_10 | dssp | 1jbi:A | 64.0 | 50 | 28 | 50 | 60 | 74 | 74 | 56.8 | 36 | 56 | 62 | 6.0 | 0.11 | 0.12 | 0.11 | 0.30 | 0.35 | 0.38 | 100.0 | 6.0 | 6.0 |
sec | 2001_10 | dssp | 1jg5:A | 63.9 | 43 | 87 | 66 | 64 | 70 | 58 | 63.9 | 43 | 75 | 61 | 3.6 | 0.19 | 0.19 | 0.21 | 0.56 | 0.42 | 0.35 | 100.0 | 9.0 | 1.0 |
sec | 2001_10 | dssp | 1jid:A | 76.3 | 61 | 77 | 73 | 57 | 84 | 80 | 64.0 | 70 | 59 | 62 | 3.5 | 0.31 | 0.32 | 0.32 | 0.58 | 0.59 | 0.58 | 100.0 | 6.0 | 3.0 |
sec | 2001_10 | dssp | 1jm7:A | 82.5 | 92 | 73 | 50 | 100 | 76 | 92 | 70.8 | 93 | 50 | 61 | 0.0 | 0.40 | 0.40 | 0.41 | 0.68 | 0.70 | 0.66 | 0.0 | 10.0 | 0.00 |
sec | 2001_10 | dssp | THIS_month:psum | 66.0 | 64 | 54 | 39 | 46 | 69 | 77 | 54.9 | 54.1 | 73.3 | 54.5 | 2.1 | 1.0 | 0.22 | 1.8 | 0.42 | 0.67 | 0.38 | 83.3 | 11.3 | 3.3 |
sec | 2001_10 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_10 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_10 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |