METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2001_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_09 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2001_09 | dssp | THIS_month:psum | 76.7 | 77 | 70 | 56 | 70 | 79 | 73 | 73.1 | 72.2 | 71.6 | 69.6 | 3.4 | 0.38 | 0.39 | 0.38 | 0.61 | 0.63 | 0.59 | 73.5 | 6.5 | 6.2 |
sec | 2001_09 | dssp | 1e1a:A | 68.6 | 0 | 0 | 54 | 83 | 85 | 66 | 63.9 | 0 | 65 | 64 | 3.8 | 0.17 | 0.19 | 0.17 | -0.02 | 0.45 | 0.47 | 0.0 | 4.0 | 17.0 |
sec | 2001_09 | dssp | 1e8c:A | 83.4 | 87 | 90 | 76 | 80 | 84 | 79 | 83.4 | 90 | 82 | 77 | 0.6 | 0.51 | 0.51 | 0.52 | 0.83 | 0.72 | 0.67 | 100.0 | 1.0 | 1.0 |
sec | 2001_09 | dssp | 1f45:B | 73.8 | 67 | 100 | 0 | 0 | 92 | 63 | 83.2 | 82 | 0 | 91 | 7.1 | 0.37 | 0.42 | 0.32 | 0.64 | -0.05 | 0.63 | 100.0 | 21.0 | 7.0 |
sec | 2001_09 | dssp | 1f46:A | 76.3 | 89 | 75 | 52 | 95 | 80 | 70 | 72.3 | 93 | 73 | 58 | 3.5 | 0.40 | 0.39 | 0.42 | 0.71 | 0.64 | 0.58 | 0.0 | 6.0 | 12.0 |
sec | 2001_09 | dssp | 1f47:B | 78.5 | 89 | 81 | 56 | 91 | 83 | 71 | 79.0 | 93 | 71 | 72 | 2.0 | 0.44 | 0.43 | 0.46 | 0.77 | 0.64 | 0.60 | 0.0 | 3.0 | 10.0 |
sec | 2001_09 | dssp | 1fex:A | 62.7 | 67 | 72 | 0 | 0 | 57 | 84 | 47.7 | 50 | 100 | 45 | 11.8 | 0.16 | 0.20 | 0.14 | 0.39 | 1.0 | 0.50 | 100.0 | 3.0 | 18.0 |
sec | 2001_09 | dssp | 1gd5:A | 82.3 | 88 | 77 | 72 | 75 | 82 | 89 | 65.3 | 95 | 62 | 54 | 4.6 | 0.45 | 0.46 | 0.46 | 0.73 | 0.67 | 0.73 | 100.0 | 4.0 | 0.00 |
sec | 2001_09 | dssp | 1gd7:A | 65.1 | 50 | 36 | 60 | 80 | 73 | 65 | 63.1 | 38 | 68 | 69 | 5.5 | 0.17 | 0.18 | 0.17 | 0.32 | 0.52 | 0.41 | 100.0 | 4.0 | 10.0 |
sec | 2001_09 | dssp | 1gd8:A | 83.8 | 93 | 94 | 52 | 100 | 87 | 60 | 85.8 | 92 | 66 | 85 | 0.0 | 0.59 | 0.57 | 0.61 | 0.86 | 0.68 | 0.62 | 100.0 | 0.00 | 9.0 |
sec | 2001_09 | dssp | 1h6k:A | 81.8 | 86 | 89 | 25 | 11 | 75 | 74 | 73.9 | 77 | 12 | 69 | 1.1 | 0.32 | 0.34 | 0.31 | 0.67 | 0.14 | 0.61 | 100.0 | 2.0 | 1.0 |
sec | 2001_09 | dssp | 1h8b:B | 82.6 | 76 | 100 | 0 | 0 | 100 | 75 | 61.3 | 55 | 100 | 91 | 8.6 | 0.53 | 0.66 | 0.42 | 0.67 | 1.0 | 0.81 | 100.0 | 17.0 | 8.0 |
sec | 2001_09 | dssp | 1hfo:A | 83.2 | 81 | 94 | 77 | 90 | 91 | 68 | 82.1 | 84 | 82 | 78 | 1.7 | 0.54 | 0.54 | 0.54 | 0.81 | 0.76 | 0.68 | 100.0 | 5.0 | 4.0 |
sec | 2001_09 | dssp | 1hno:A | 78.1 | 85 | 75 | 85 | 80 | 68 | 78 | 76.9 | 91 | 86 | 64 | 0.0 | 0.45 | 0.46 | 0.45 | 0.71 | 0.76 | 0.55 | 0.0 | 4.0 | 1.0 |
sec | 2001_09 | dssp | 1ho8:A | 79.2 | 96 | 76 | 0 | 0 | 50 | 90 | 71.1 | 98 | 100 | 40 | 0.0 | 0.28 | 0.25 | 0.32 | 0.56 | 1.0 | 0.56 | 100.0 | 16.0 | 0.00 |
sec | 2001_09 | dssp | 1hrk:A | 85.8 | 84 | 91 | 82 | 97 | 88 | 76 | 81.5 | 79 | 92 | 79 | 0.2 | 0.55 | 0.56 | 0.56 | 0.76 | 0.88 | 0.71 | 100.0 | 3.0 | 2.0 |
sec | 2001_09 | dssp | 1hze:A | 85.6 | 100 | 61 | 80 | 94 | 85 | 90 | 85.3 | 76 | 90 | 83 | 4.1 | 0.56 | 0.58 | 0.54 | 0.74 | 0.79 | 0.78 | 100.0 | 8.0 | 6.0 |
sec | 2001_09 | dssp | 1i18:A | 79.4 | 100 | 42 | 77 | 94 | 77 | 85 | 72.6 | 66 | 90 | 60 | 4.1 | 0.45 | 0.49 | 0.43 | 0.60 | 0.75 | 0.66 | 100.0 | 12.0 | 8.0 |
sec | 2001_09 | dssp | 1i8a:A | 80.4 | 28 | 66 | 78 | 89 | 90 | 74 | 74.8 | 35 | 88 | 68 | 1.0 | 0.39 | 0.37 | 0.42 | 0.40 | 0.71 | 0.64 | 100.0 | 4.0 | 5.0 |
sec | 2001_09 | dssp | 1i9g:A | 81.1 | 94 | 80 | 68 | 80 | 81 | 81 | 79.6 | 95 | 77 | 72 | 3.0 | 0.47 | 0.47 | 0.48 | 0.82 | 0.64 | 0.67 | 0.0 | 4.0 | 4.0 |
sec | 2001_09 | dssp | 1iqp:A | 85.6 | 87 | 91 | 78 | 100 | 84 | 71 | 84.8 | 91 | 84 | 71 | 0.6 | 0.51 | 0.51 | 0.52 | 0.73 | 0.87 | 0.68 | 100.0 | 3.0 | 2.0 |
sec | 2001_09 | dssp | 1j75:A | 70.2 | 66 | 100 | 45 | 50 | 100 | 52 | 59.0 | 58 | 54 | 63 | 8.7 | 0.39 | 0.41 | 0.39 | 0.67 | 0.35 | 0.61 | 100.0 | 19.0 | 1.0 |
sec | 2001_09 | dssp | 1j7v:R | 66.8 | 36 | 13 | 56 | 77 | 79 | 74 | 65.0 | 27 | 60 | 72 | 9.2 | 0.17 | 0.18 | 0.16 | 0.15 | 0.45 | 0.52 | 100.0 | 8.0 | 12.0 |
sec | 2001_09 | dssp | 1j8r:A | 61.7 | 75 | 10 | 43 | 90 | 86 | 60 | 67.7 | 100 | 57 | 80 | 9.6 | 0.17 | 0.19 | 0.15 | 0.25 | 0.41 | 0.47 | 0.0 | 12.0 | 29.0 |
sec | 2001_09 | dssp | 1j9y:A | 74.9 | 85 | 77 | 44 | 50 | 75 | 79 | 70.7 | 76 | 44 | 72 | 3.0 | 0.31 | 0.31 | 0.32 | 0.70 | 0.39 | 0.56 | 100.0 | 3.0 | 1.0 |
sec | 2001_09 | dssp | 1jce:A | 65.8 | 80 | 71 | 46 | 78 | 65 | 52 | 62.9 | 72 | 53 | 57 | 5.4 | 0.23 | 0.23 | 0.24 | 0.58 | 0.49 | 0.37 | 0.0 | 4.0 | 12.0 |
sec | 2001_09 | dssp | 1jcg:A | 65.6 | 79 | 68 | 50 | 81 | 62 | 54 | 63.3 | 74 | 54 | 57 | 5.0 | 0.23 | 0.23 | 0.24 | 0.55 | 0.53 | 0.36 | 0.0 | 6.0 | 11.0 |
sec | 2001_09 | dssp | 1jma:A | 72.2 | 40 | 70 | 64 | 70 | 86 | 73 | 66.4 | 37 | 76 | 69 | 3.4 | 0.24 | 0.23 | 0.26 | 0.47 | 0.54 | 0.51 | 100.0 | 6.0 | 2.0 |
sec | 2001_09 | dssp | 1jmt:A | 78.6 | 75 | 100 | 66 | 100 | 100 | 50 | 90.2 | 100 | 80 | 79 | 0.0 | 0.56 | 0.57 | 0.56 | 0.77 | 0.77 | 0.60 | 100.0 | 12.0 | 8.0 |
sec | 2001_09 | dssp | 1jnx:X | 77.8 | 81 | 78 | 81 | 63 | 73 | 84 | 76.5 | 69 | 81 | 80 | 3.3 | 0.37 | 0.38 | 0.37 | 0.69 | 0.65 | 0.62 | 0.0 | 1.0 | 4.0 |
sec | 2001_09 | dssp | 1jr3:A | 89.1 | 95 | 88 | 82 | 95 | 81 | 88 | 85.4 | 87 | 92 | 80 | 0.0 | 0.60 | 0.59 | 0.61 | 0.81 | 0.87 | 0.76 | 100.0 | 4.0 | 1.0 |
sec | 2001_09 | dssp | 1jr3:D | 79.6 | 94 | 78 | 63 | 92 | 62 | 77 | 75.0 | 79 | 78 | 65 | 1.1 | 0.42 | 0.40 | 0.45 | 0.66 | 0.74 | 0.55 | 100.0 | 10.0 | 3.0 |
sec | 2001_09 | dssp | 1jx3:A | 70.3 | 84 | 68 | 46 | 54 | 70 | 76 | 62.5 | 79 | 53 | 58 | 2.0 | 0.26 | 0.27 | 0.27 | 0.64 | 0.40 | 0.44 | 100.0 | 6.0 | 2.0 |
sec | 2001_09 | dssp | 1jx5:A | 77.0 | 100 | 10 | 66 | 71 | 81 | 86 | 66.4 | 28 | 71 | 64 | 2.2 | 0.23 | 0.26 | 0.21 | 0.30 | 0.55 | 0.54 | 100.0 | 5.0 | 2.0 |
sec | 2001_09 | dssp | 1jzt:A | 83.5 | 85 | 82 | 84 | 86 | 82 | 83 | 86.9 | 90 | 94 | 81 | 0.0 | 0.51 | 0.51 | 0.51 | 0.74 | 0.82 | 0.67 | 100.0 | 1.0 | 0.00 |
sec | 2001_09 | dssp | THIS_month:psum | 76.7 | 77 | 70 | 56 | 70 | 79 | 73 | 73.1 | 72.2 | 71.6 | 69.6 | 3.4 | 0.38 | 0.39 | 0.38 | 0.61 | 0.63 | 0.59 | 73.5 | 6.5 | 6.2 |
sec | 2001_09 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |