METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2001_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_09 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2001_09 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2001_09 | dssp | THIS_month:psum | 76.8 | 72 | 62 | 61 | 77 | 76 | 73 | 74.1 | 77.0 | 69.5 | 68.1 | 1.7 | 0.38 | 0.38 | 0.38 | 0.62 | 0.62 | 0.56 | 73.0 | 4.3 | 7.3 |
sec | 2001_09 | dssp | 1dfc:B | 69.0 | 0 | 0 | 91 | 50 | 60 | 94 | 63.6 | 100 | 47 | 70 | 0.0 | 0.20 | 0.24 | 0.18 | 1.0 | 0.49 | 0.46 | 100.0 | 2.0 | 23.0 |
sec | 2001_09 | dssp | 1e1a:A | 71.8 | 0 | 0 | 61 | 85 | 85 | 65 | 70.0 | 0 | 71 | 69 | 0.3 | 0.19 | 0.20 | 0.20 | -0.01 | 0.51 | 0.46 | 0.0 | 0.00 | 14.0 |
sec | 2001_09 | dssp | 1e8c:A | 78.2 | 88 | 76 | 65 | 84 | 76 | 77 | 77.3 | 91 | 72 | 68 | 2.4 | 0.40 | 0.40 | 0.41 | 0.72 | 0.67 | 0.60 | 0.0 | 5.0 | 5.0 |
sec | 2001_09 | dssp | 1e8p:A | 73.9 | 57 | 80 | 61 | 91 | 90 | 65 | 69.3 | 57 | 77 | 66 | 0.0 | 0.36 | 0.34 | 0.39 | 0.62 | 0.63 | 0.52 | 100.0 | 4.0 | 13.0 |
sec | 2001_09 | dssp | 1e8q:A | 71.7 | 50 | 60 | 61 | 91 | 86 | 65 | 68.0 | 40 | 77 | 67 | 0.0 | 0.32 | 0.30 | 0.34 | 0.48 | 0.63 | 0.46 | 100.0 | 2.0 | 13.0 |
sec | 2001_09 | dssp | 1f45:B | 75.0 | 82 | 85 | 0 | 0 | 63 | 63 | 78.3 | 85 | 0 | 66 | 5.0 | 0.24 | 0.25 | 0.23 | 0.47 | -0.03 | 0.49 | 100.0 | 2.0 | 2.0 |
sec | 2001_09 | dssp | 1fex:A | 81.4 | 96 | 83 | 0 | 0 | 64 | 94 | 75.0 | 100 | 100 | 56 | 0.0 | 0.45 | 0.51 | 0.41 | 0.77 | 1.0 | 0.65 | 100.0 | 8.0 | 6.0 |
sec | 2001_09 | dssp | 1fsi:B | 73.5 | 93 | 66 | 61 | 92 | 69 | 68 | 70.3 | 100 | 52 | 73 | 4.7 | 0.38 | 0.38 | 0.39 | 0.68 | 0.66 | 0.52 | 0.0 | 11.0 | 12.0 |
sec | 2001_09 | dssp | 1fsi:C | 71.8 | 88 | 65 | 61 | 92 | 67 | 64 | 68.1 | 94 | 52 | 68 | 4.5 | 0.35 | 0.35 | 0.35 | 0.64 | 0.66 | 0.48 | 0.0 | 10.0 | 12.0 |
sec | 2001_09 | dssp | 1gd5:A | 83.8 | 97 | 79 | 80 | 83 | 75 | 88 | 75.7 | 98 | 66 | 67 | 0.0 | 0.55 | 0.56 | 0.56 | 0.81 | 0.77 | 0.68 | 100.0 | 7.0 | 0.00 |
sec | 2001_09 | dssp | 1gd7:A | 73.4 | 71 | 43 | 71 | 89 | 75 | 75 | 76.2 | 78 | 76 | 75 | 4.5 | 0.32 | 0.33 | 0.31 | 0.47 | 0.68 | 0.55 | 100.0 | 8.0 | 8.0 |
sec | 2001_09 | dssp | 1hze:A | 80.4 | 84 | 61 | 88 | 86 | 71 | 83 | 76.9 | 80 | 100 | 59 | 1.0 | 0.44 | 0.46 | 0.44 | 0.66 | 0.76 | 0.62 | 100.0 | 5.0 | 1.0 |
sec | 2001_09 | dssp | 1i18:A | 74.2 | 77 | 38 | 84 | 86 | 63 | 77 | 66.5 | 77 | 100 | 45 | 1.0 | 0.36 | 0.38 | 0.34 | 0.48 | 0.72 | 0.50 | 100.0 | 9.0 | 1.0 |
sec | 2001_09 | dssp | 1i8a:A | 79.4 | 57 | 53 | 69 | 92 | 93 | 75 | 79.2 | 45 | 78 | 85 | 3.1 | 0.38 | 0.38 | 0.39 | 0.51 | 0.67 | 0.67 | 100.0 | 0.00 | 11.0 |
sec | 2001_09 | dssp | 1iiw:A | 79.2 | 87 | 88 | 66 | 87 | 80 | 66 | 81.0 | 96 | 70 | 75 | 0.0 | 0.48 | 0.48 | 0.50 | 0.81 | 0.68 | 0.56 | 100.0 | 0.00 | 6.0 |
sec | 2001_09 | dssp | 1iqp:A | 81.9 | 86 | 89 | 75 | 82 | 74 | 67 | 80.3 | 88 | 84 | 63 | 0.9 | 0.42 | 0.42 | 0.42 | 0.68 | 0.76 | 0.58 | 100.0 | 2.0 | 0.00 |
sec | 2001_09 | dssp | 1j75:A | 82.5 | 96 | 91 | 27 | 100 | 92 | 63 | 81.4 | 100 | 36 | 72 | 3.5 | 0.54 | 0.50 | 0.59 | 0.85 | 0.48 | 0.68 | 100.0 | 3.0 | 14.0 |
sec | 2001_09 | dssp | 1j7v:R | 77.6 | 36 | 50 | 79 | 80 | 80 | 77 | 78.0 | 36 | 82 | 78 | 0.9 | 0.28 | 0.28 | 0.29 | 0.39 | 0.63 | 0.57 | 100.0 | 1.0 | 0.00 |
sec | 2001_09 | dssp | 1j8r:A | 64.3 | 100 | 13 | 52 | 88 | 78 | 63 | 65.4 | 100 | 60 | 71 | 8.6 | 0.18 | 0.21 | 0.16 | 0.33 | 0.45 | 0.46 | 0.0 | 13.0 | 22.0 |
sec | 2001_09 | dssp | 1jce:A | 76.0 | 88 | 84 | 60 | 88 | 73 | 59 | 77.7 | 86 | 71 | 72 | 0.6 | 0.43 | 0.43 | 0.44 | 0.77 | 0.65 | 0.49 | 0.0 | 1.0 | 9.0 |
sec | 2001_09 | dssp | 1jcg:A | 74.8 | 86 | 81 | 61 | 89 | 72 | 61 | 77.0 | 88 | 71 | 68 | 0.8 | 0.40 | 0.40 | 0.42 | 0.73 | 0.66 | 0.48 | 0.0 | 2.0 | 8.0 |
sec | 2001_09 | dssp | 1jnx:X | 91.1 | 100 | 100 | 83 | 83 | 89 | 89 | 92.8 | 100 | 91 | 88 | 0.0 | 0.75 | 0.76 | 0.76 | 1.0 | 0.77 | 0.81 | 100.0 | 0.00 | 0.00 |
sec | 2001_09 | dssp | 1jr3:D | 83.7 | 97 | 84 | 60 | 95 | 69 | 80 | 85.4 | 93 | 71 | 77 | 0.0 | 0.53 | 0.50 | 0.56 | 0.77 | 0.74 | 0.63 | 100.0 | 8.0 | 4.0 |
sec | 2001_09 | dssp | 1jx3:A | 71.5 | 91 | 69 | 41 | 54 | 70 | 77 | 48.9 | 83 | 51 | 40 | 1.6 | 0.30 | 0.31 | 0.31 | 0.70 | 0.38 | 0.46 | 100.0 | 9.0 | 4.0 |
sec | 2001_09 | dssp | 1jx5:A | 80.1 | 0 | 0 | 68 | 71 | 86 | 85 | 70.6 | 0 | 73 | 70 | 0.8 | 0.25 | 0.25 | 0.25 | -0.00 | 0.55 | 0.56 | 100.0 | 0.00 | 1.0 |
sec | 2001_09 | dssp | 1jzt:A | 79.0 | 81 | 82 | 78 | 71 | 76 | 78 | 75.4 | 88 | 81 | 65 | 0.0 | 0.42 | 0.43 | 0.43 | 0.72 | 0.70 | 0.57 | 100.0 | 0.00 | 1.0 |
sec | 2001_09 | dssp | THIS_month:psum | 76.8 | 72 | 62 | 61 | 77 | 76 | 73 | 74.1 | 77.0 | 69.5 | 68.1 | 1.7 | 0.38 | 0.38 | 0.38 | 0.62 | 0.62 | 0.56 | 73.0 | 4.3 | 7.3 |
sec | 2001_09 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2001_09 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |