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EVA sec results for: PSIpred month: 2001_09

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2001_09 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2001_09 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2001_09	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_09	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_09	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2001_09	dssp	THIS_month:psum	77.4	79	73	57	68	77	71	74.1	77.1	70.4	68.2	1.1	0.40	0.39	0.40	0.65	0.69	0.55	85.2	3.1	5.9

sec	2001_09	dssp	1e1a:A	76.6	66	22	66	88	88	71	74.0	75	76	71	1.2	0.27	0.28	0.27	0.37	0.58	0.57	0.0	1.0	13.0
sec	2001_09	dssp	1e8c:A	84.4	91	84	76	89	82	82	84.4	91	83	79	0.8	0.53	0.53	0.54	0.81	0.78	0.69	0.0	3.0	3.0
sec	2001_09	dssp	1e8p:A	56.5	57	66	22	80	85	51	37.3	57	27	38	0.0	0.20	0.17	0.24	0.55	0.29	0.20	100.0	2.0	28.0
sec	2001_09	dssp	1e8q:A	54.3	50	50	22	80	81	51	33.0	33	27	37	0.0	0.17	0.14	0.20	0.42	0.29	0.12	100.0	0.00	28.0
sec	2001_09	dssp	1f45:B	81.0	89	86	0	0	69	69	87.1	96	0	73	0.0	0.30	0.28	0.32	0.61	1.0	0.55	100.0	2.0	2.0
sec	2001_09	dssp	1fex:A	64.4	64	71	0	0	64	81	68.3	67	100	68	11.8	0.18	0.22	0.15	0.35	1.0	0.53	100.0	5.0	15.0
sec	2001_09	dssp	1gd5:A	85.4	88	86	88	81	82	86	81.8	93	82	74	0.0	0.55	0.56	0.55	0.81	0.80	0.70	100.0	0.00	1.0
sec	2001_09	dssp	1gd7:A	79.8	71	76	80	82	81	78	82.3	78	85	80	1.8	0.40	0.41	0.41	0.70	0.67	0.63	100.0	0.00	0.00
sec	2001_09	dssp	1gd8:A	81.9	91	91	66	87	70	58	77.9	79	86	67	0.0	0.50	0.50	0.51	0.80	0.71	0.52	100.0	0.00	4.0
sec	2001_09	dssp	1h6k:A	78.7	80	91	37	13	76	67	75.7	84	18	63	0.9	0.30	0.32	0.28	0.64	0.20	0.56	100.0	7.0	2.0
sec	2001_09	dssp	1h8b:B	91.3	88	100	0	0	100	75	97.1	100	100	88	0.0	0.62	0.66	0.58	0.81	1.0	0.81	100.0	8.0	0.00
sec	2001_09	dssp	1hfo:A	84.1	86	97	77	84	88	71	80.8	86	82	71	1.7	0.55	0.56	0.56	0.87	0.72	0.69	100.0	4.0	2.0
sec	2001_09	dssp	1hno:A	82.2	95	74	85	89	71	85	78.9	93	85	65	0.0	0.54	0.55	0.54	0.76	0.82	0.63	0.0	8.0	1.0
sec	2001_09	dssp	1ho8:A	66.0	84	80	0	0	35	58	50.5	64	100	27	0.0	0.23	0.27	0.21	0.51	1.0	0.22	100.0	3.0	11.0
sec	2001_09	dssp	1hrk:A	83.3	83	92	75	88	86	72	81.7	85	90	73	0.0	0.51	0.51	0.52	0.76	0.78	0.65	100.0	5.0	2.0
sec	2001_09	dssp	1hze:A	83.5	76	71	88	90	80	80	86.9	54	100	83	0.0	0.50	0.51	0.50	0.69	0.81	0.66	100.0	1.0	1.0
sec	2001_09	dssp	1i18:A	83.5	100	64	84	90	79	83	81.5	61	100	70	0.0	0.52	0.55	0.51	0.77	0.77	0.66	100.0	5.0	3.0
sec	2001_09	dssp	1i8a:A	76.7	14	50	81	83	81	71	77.5	20	93	71	0.0	0.32	0.30	0.35	0.23	0.68	0.54	100.0	5.0	1.0
sec	2001_09	dssp	1i9g:A	81.1	87	95	72	77	83	75	82.8	95	75	79	0.3	0.51	0.51	0.51	0.88	0.64	0.62	100.0	2.0	1.0
sec	2001_09	dssp	1iqp:A	84.4	88	90	75	96	79	69	83.2	90	81	68	0.3	0.48	0.48	0.49	0.72	0.83	0.63	100.0	1.0	2.0
sec	2001_09	dssp	1j75:A	73.7	93	93	0	0	84	45	69.6	100	0	51	0.0	0.56	0.46	0.66	0.85	1.0	0.46	100.0	0.00	19.0
sec	2001_09	dssp	1j7v:R	74.6	36	36	81	72	72	82	69.1	31	72	70	3.9	0.26	0.27	0.27	0.32	0.55	0.57	100.0	0.00	5.0
sec	2001_09	dssp	1j8r:A	62.8	100	20	56	82	70	56	63.9	100	63	62	2.5	0.16	0.18	0.14	0.42	0.41	0.31	0.0	8.0	18.0
sec	2001_09	dssp	1j9y:A	72.8	76	72	46	61	77	75	66.4	68	39	73	3.4	0.25	0.25	0.26	0.59	0.47	0.52	100.0	1.0	3.0
sec	2001_09	dssp	1jce:A	75.1	81	83	65	88	75	59	75.3	81	73	69	1.2	0.40	0.40	0.40	0.71	0.69	0.49	100.0	1.0	7.0
sec	2001_09	dssp	1jcg:A	74.0	85	76	64	88	68	62	74.7	81	75	67	2.0	0.37	0.37	0.38	0.68	0.68	0.47	0.0	4.0	7.0
sec	2001_09	dssp	1jma:A	79.9	73	88	68	81	88	77	69.8	80	75	64	0.0	0.42	0.41	0.45	0.77	0.65	0.59	100.0	2.0	5.0
sec	2001_09	dssp	1jmt:A	73.2	79	88	60	81	75	47	60.9	53	66	90	3.5	0.36	0.37	0.36	0.68	0.61	0.45	100.0	5.0	7.0
sec	2001_09	dssp	1jnx:X	75.4	86	75	59	73	73	75	73.9	81	64	71	0.9	0.35	0.35	0.36	0.69	0.59	0.52	100.0	4.0	3.0
sec	2001_09	dssp	1jr3:A	86.6	96	85	82	85	73	88	87.1	96	88	74	0.0	0.54	0.53	0.56	0.78	0.82	0.71	100.0	6.0	0.00
sec	2001_09	dssp	1jr3:D	87.6	95	90	65	96	82	81	92.1	99	73	86	0.0	0.58	0.57	0.60	0.83	0.77	0.72	100.0	2.0	3.0
sec	2001_09	dssp	1jx3:A	72.4	84	68	48	62	73	77	57.2	83	56	48	2.0	0.28	0.28	0.29	0.64	0.47	0.48	100.0	6.0	3.0
sec	2001_09	dssp	1jx5:A	78.1	66	11	73	68	80	87	72.6	75	76	71	1.1	0.24	0.26	0.22	0.26	0.56	0.55	100.0	3.0	1.0
sec	2001_09	dssp	1jzt:A	86.4	92	87	81	81	83	87	85.4	95	85	78	0.0	0.56	0.57	0.57	0.83	0.78	0.72	100.0	2.0	0.00

sec	2001_09	dssp	THIS_month:psum	77.4	79	73	57	68	77	71	74.1	77.1	70.4	68.2	1.1	0.40	0.39	0.40	0.65	0.69	0.55	85.2	3.1	5.9

sec	2001_09	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_09	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_09	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2001_09
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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