METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2001_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_09 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2001_09 | dssp | THIS_month:psum | 74.8 | 62 | 63 | 56 | 68 | 77 | 69 | 72.0 | 62.2 | 70.3 | 69.4 | 2.2 | 0.34 | 0.34 | 0.35 | 0.65 | 0.62 | 0.53 | 79.4 | 7.6 | 5.4 |
sec | 2001_09 | dssp | 1e1a:A | 71.8 | 0 | 0 | 58 | 83 | 88 | 66 | 63.9 | 0 | 66 | 62 | 1.9 | 0.20 | 0.20 | 0.20 | -0.01 | 0.47 | 0.50 | 0.0 | 0.00 | 16.0 |
sec | 2001_09 | dssp | 1e8c:A | 81.0 | 88 | 86 | 74 | 80 | 78 | 76 | 79.1 | 90 | 72 | 74 | 0.0 | 0.49 | 0.49 | 0.49 | 0.80 | 0.70 | 0.61 | 100.0 | 1.0 | 1.0 |
sec | 2001_09 | dssp | 1e8p:A | 60.9 | 0 | 0 | 61 | 64 | 80 | 58 | 61.8 | 0 | 73 | 72 | 4.3 | 0.10 | 0.08 | 0.13 | 1.0 | 0.40 | 0.34 | 100.0 | 15.0 | 2.0 |
sec | 2001_09 | dssp | 1e8q:A | 60.9 | 0 | 0 | 61 | 64 | 77 | 58 | 61.8 | 0 | 73 | 68 | 2.1 | 0.10 | 0.08 | 0.12 | 1.0 | 0.40 | 0.28 | 100.0 | 13.0 | 2.0 |
sec | 2001_09 | dssp | 1f45:B | 66.7 | 67 | 100 | 0 | 0 | 69 | 56 | 65.5 | 67 | 0 | 65 | 7.1 | 0.32 | 0.39 | 0.27 | 0.64 | -0.06 | 0.42 | 100.0 | 21.0 | 14.0 |
sec | 2001_09 | dssp | 1fex:A | 72.9 | 93 | 74 | 0 | 0 | 50 | 87 | 77.7 | 100 | 100 | 57 | 0.0 | 0.28 | 0.31 | 0.26 | 0.61 | 1.0 | 0.48 | 100.0 | 13.0 | 6.0 |
sec | 2001_09 | dssp | 1gd5:A | 83.8 | 90 | 81 | 64 | 80 | 87 | 87 | 85.4 | 93 | 61 | 89 | 3.8 | 0.49 | 0.49 | 0.50 | 0.78 | 0.65 | 0.75 | 100.0 | 3.0 | 3.0 |
sec | 2001_09 | dssp | 1gd7:A | 64.2 | 0 | 0 | 82 | 63 | 65 | 65 | 61.5 | 0 | 82 | 59 | 4.5 | 0.14 | 0.12 | 0.17 | 1.0 | 0.47 | 0.36 | 0.0 | 12.0 | 12.0 |
sec | 2001_09 | dssp | 1gd8:A | 78.1 | 95 | 81 | 33 | 87 | 75 | 66 | 79.0 | 93 | 44 | 73 | 7.6 | 0.37 | 0.34 | 0.40 | 0.69 | 0.48 | 0.61 | 100.0 | 9.0 | 12.0 |
sec | 2001_09 | dssp | 1h6k:A | 78.9 | 84 | 87 | 0 | 0 | 71 | 72 | 78.4 | 83 | 0 | 73 | 2.4 | 0.26 | 0.28 | 0.25 | 0.61 | -0.02 | 0.58 | 100.0 | 2.0 | 2.0 |
sec | 2001_09 | dssp | 1h8b:B | 56.5 | 47 | 88 | 0 | 0 | 83 | 35 | 41.7 | 34 | 100 | 85 | 0.0 | 0.06 | 0.07 | 0.06 | 0.27 | 1.0 | 0.27 | 100.0 | 34.0 | 0.00 |
sec | 2001_09 | dssp | 1hfo:A | 70.8 | 59 | 92 | 80 | 77 | 76 | 53 | 69.1 | 72 | 81 | 52 | 1.7 | 0.36 | 0.36 | 0.37 | 0.63 | 0.69 | 0.43 | 0.0 | 14.0 | 0.00 |
sec | 2001_09 | dssp | 1hno:A | 75.3 | 71 | 65 | 80 | 94 | 75 | 72 | 74.6 | 76 | 85 | 67 | 1.3 | 0.40 | 0.40 | 0.41 | 0.54 | 0.82 | 0.52 | 0.0 | 2.0 | 4.0 |
sec | 2001_09 | dssp | 1ho8:A | 86.8 | 100 | 82 | 0 | 0 | 65 | 100 | 74.9 | 77 | 100 | 70 | 0.0 | 0.51 | 0.47 | 0.56 | 0.73 | 1.0 | 0.73 | 100.0 | 13.0 | 0.00 |
sec | 2001_09 | dssp | 1hrk:A | 86.9 | 85 | 93 | 84 | 95 | 89 | 77 | 85.2 | 82 | 92 | 86 | 0.0 | 0.58 | 0.59 | 0.59 | 0.79 | 0.88 | 0.73 | 100.0 | 4.0 | 1.0 |
sec | 2001_09 | dssp | 1hze:A | 81.4 | 23 | 50 | 83 | 94 | 97 | 75 | 78.1 | 30 | 82 | 87 | 4.1 | 0.50 | 0.47 | 0.54 | 0.27 | 0.81 | 0.73 | 100.0 | 7.0 | 5.0 |
sec | 2001_09 | dssp | 1i18:A | 83.5 | 33 | 50 | 79 | 94 | 97 | 79 | 82.4 | 44 | 79 | 93 | 4.1 | 0.48 | 0.47 | 0.51 | 0.36 | 0.77 | 0.77 | 100.0 | 3.0 | 7.0 |
sec | 2001_09 | dssp | 1i8a:A | 78.8 | 50 | 36 | 73 | 90 | 88 | 78 | 80.2 | 31 | 84 | 83 | 4.7 | 0.37 | 0.38 | 0.36 | 0.37 | 0.68 | 0.67 | 100.0 | 2.0 | 8.0 |
sec | 2001_09 | dssp | 1i9g:A | 78.0 | 76 | 93 | 73 | 73 | 82 | 73 | 76.6 | 83 | 79 | 71 | 1.8 | 0.41 | 0.41 | 0.42 | 0.79 | 0.62 | 0.59 | 100.0 | 4.0 | 0.00 |
sec | 2001_09 | dssp | 1iqp:A | 79.4 | 85 | 85 | 65 | 95 | 71 | 64 | 79.0 | 89 | 75 | 59 | 1.5 | 0.36 | 0.36 | 0.37 | 0.60 | 0.77 | 0.54 | 100.0 | 0.00 | 3.0 |
sec | 2001_09 | dssp | 1j75:A | 80.7 | 87 | 96 | 45 | 100 | 92 | 54 | 83.6 | 100 | 54 | 66 | 0.0 | 0.54 | 0.53 | 0.56 | 0.82 | 0.63 | 0.59 | 100.0 | 5.0 | 10.0 |
sec | 2001_09 | dssp | 1j7v:R | 78.0 | 0 | 0 | 69 | 91 | 94 | 71 | 68.9 | 0 | 75 | 70 | 0.0 | 0.34 | 0.29 | 0.40 | 1.0 | 0.67 | 0.59 | 100.0 | 5.0 | 10.0 |
sec | 2001_09 | dssp | 1j8r:A | 62.8 | 100 | 12 | 51 | 89 | 76 | 62 | 62.4 | 100 | 53 | 76 | 8.6 | 0.18 | 0.21 | 0.15 | 0.32 | 0.45 | 0.43 | 0.0 | 14.0 | 23.0 |
sec | 2001_09 | dssp | 1j9y:A | 67.5 | 67 | 70 | 51 | 46 | 71 | 71 | 59.5 | 70 | 50 | 55 | 4.3 | 0.18 | 0.19 | 0.18 | 0.52 | 0.40 | 0.43 | 100.0 | 1.0 | 1.0 |
sec | 2001_09 | dssp | 1jce:A | 68.5 | 81 | 77 | 50 | 81 | 68 | 52 | 68.1 | 78 | 58 | 63 | 3.0 | 0.29 | 0.28 | 0.30 | 0.65 | 0.54 | 0.39 | 0.0 | 1.0 | 11.0 |
sec | 2001_09 | dssp | 1jcg:A | 68.6 | 81 | 75 | 53 | 83 | 67 | 54 | 67.2 | 81 | 55 | 62 | 2.3 | 0.30 | 0.30 | 0.31 | 0.63 | 0.57 | 0.38 | 0.0 | 2.0 | 10.0 |
sec | 2001_09 | dssp | 1jma:A | 73.0 | 45 | 65 | 62 | 85 | 87 | 69 | 56.8 | 44 | 73 | 51 | 0.3 | 0.29 | 0.27 | 0.32 | 0.47 | 0.63 | 0.47 | 100.0 | 5.0 | 8.0 |
sec | 2001_09 | dssp | 1jmt:A | 75.0 | 72 | 100 | 73 | 84 | 83 | 45 | 90.8 | 100 | 86 | 73 | 0.0 | 0.49 | 0.51 | 0.48 | 0.74 | 0.71 | 0.47 | 100.0 | 14.0 | 3.0 |
sec | 2001_09 | dssp | 1jnx:X | 75.8 | 69 | 89 | 78 | 61 | 79 | 75 | 70.9 | 69 | 78 | 69 | 1.9 | 0.37 | 0.38 | 0.37 | 0.69 | 0.61 | 0.55 | 100.0 | 7.0 | 4.0 |
sec | 2001_09 | dssp | 1jr3:A | 84.7 | 97 | 82 | 75 | 87 | 68 | 89 | 81.3 | 88 | 88 | 71 | 0.2 | 0.51 | 0.49 | 0.53 | 0.75 | 0.79 | 0.67 | 100.0 | 10.0 | 1.0 |
sec | 2001_09 | dssp | 1jr3:D | 77.2 | 97 | 75 | 63 | 82 | 50 | 80 | 72.9 | 80 | 73 | 60 | 1.4 | 0.39 | 0.36 | 0.43 | 0.64 | 0.69 | 0.50 | 100.0 | 15.0 | 2.0 |
sec | 2001_09 | dssp | 1jx3:A | 73.6 | 88 | 72 | 58 | 63 | 70 | 78 | 59.5 | 78 | 67 | 51 | 0.0 | 0.35 | 0.36 | 0.36 | 0.70 | 0.53 | 0.47 | 100.0 | 6.0 | 1.0 |
sec | 2001_09 | dssp | 1jx5:A | 79.6 | 0 | 0 | 68 | 69 | 85 | 84 | 72.0 | 0 | 68 | 73 | 0.0 | 0.22 | 0.22 | 0.24 | 1.0 | 0.54 | 0.53 | 100.0 | 0.00 | 0.00 |
sec | 2001_09 | dssp | 1jzt:A | 82.3 | 78 | 89 | 86 | 75 | 83 | 80 | 80.9 | 84 | 87 | 76 | 0.0 | 0.49 | 0.50 | 0.49 | 0.75 | 0.76 | 0.64 | 100.0 | 4.0 | 2.0 |
sec | 2001_09 | dssp | THIS_month:psum | 74.8 | 62 | 63 | 56 | 68 | 77 | 69 | 72.0 | 62.2 | 70.3 | 69.4 | 2.2 | 0.34 | 0.34 | 0.35 | 0.65 | 0.62 | 0.53 | 79.4 | 7.6 | 5.4 |
sec | 2001_09 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |