METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2001_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_09 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2001_09 | dssp | THIS_month:psum | 74.3 | 56 | 65 | 53 | 71 | 85 | 67 | 71.9 | 60.4 | 66.1 | 69.8 | 2.2 | 0.35 | 0.34 | 0.35 | 0.65 | 0.59 | 0.54 | 78.7 | 6.8 | 7.4 |
sec | 2001_09 | dssp | 1e1a:A | 69.2 | 0 | 0 | 53 | 84 | 88 | 63 | 63.5 | 0 | 63 | 64 | 1.6 | 0.18 | 0.18 | 0.18 | -0.01 | 0.45 | 0.45 | 0.0 | 0.00 | 19.0 |
sec | 2001_09 | dssp | 1e8c:A | 82.8 | 87 | 86 | 70 | 86 | 85 | 78 | 83.6 | 90 | 78 | 81 | 1.4 | 0.49 | 0.49 | 0.50 | 0.79 | 0.72 | 0.68 | 0.0 | 0.00 | 4.0 |
sec | 2001_09 | dssp | 1e8p:A | 54.3 | 0 | 0 | 33 | 75 | 90 | 50 | 31.7 | 0 | 40 | 34 | 0.0 | 0.10 | 0.07 | 0.15 | 1.0 | 0.33 | 0.19 | 100.0 | 15.0 | 21.0 |
sec | 2001_09 | dssp | 1e8q:A | 56.5 | 0 | 0 | 33 | 75 | 90 | 52 | 33.1 | 0 | 40 | 36 | 0.0 | 0.10 | 0.07 | 0.14 | 1.0 | 0.33 | 0.20 | 100.0 | 13.0 | 21.0 |
sec | 2001_09 | dssp | 1f45:B | 76.2 | 75 | 100 | 0 | 0 | 84 | 57 | 75.0 | 82 | 0 | 65 | 0.0 | 0.43 | 0.47 | 0.40 | 0.70 | -0.03 | 0.52 | 100.0 | 16.0 | 2.0 |
sec | 2001_09 | dssp | 1fex:A | 66.1 | 54 | 80 | 0 | 0 | 78 | 78 | 69.5 | 58 | 100 | 80 | 13.5 | 0.22 | 0.27 | 0.18 | 0.42 | 1.0 | 0.59 | 100.0 | 16.0 | 16.0 |
sec | 2001_09 | dssp | 1gd5:A | 86.9 | 81 | 94 | 84 | 80 | 91 | 85 | 87.8 | 83 | 87 | 90 | 1.5 | 0.56 | 0.56 | 0.57 | 0.82 | 0.78 | 0.77 | 100.0 | 4.0 | 0.00 |
sec | 2001_09 | dssp | 1gd7:A | 78.9 | 64 | 81 | 73 | 89 | 87 | 71 | 81.9 | 73 | 82 | 83 | 0.0 | 0.41 | 0.40 | 0.43 | 0.69 | 0.70 | 0.59 | 100.0 | 2.0 | 7.0 |
sec | 2001_09 | dssp | 1gd8:A | 78.1 | 91 | 83 | 28 | 85 | 87 | 65 | 82.3 | 94 | 38 | 90 | 8.5 | 0.38 | 0.36 | 0.42 | 0.68 | 0.43 | 0.67 | 100.0 | 5.0 | 13.0 |
sec | 2001_09 | dssp | 1h6k:A | 74.2 | 68 | 93 | 25 | 6 | 87 | 63 | 75.9 | 80 | 10 | 70 | 4.5 | 0.25 | 0.28 | 0.23 | 0.57 | 0.09 | 0.58 | 0.0 | 17.0 | 4.0 |
sec | 2001_09 | dssp | 1hfo:A | 74.3 | 59 | 96 | 74 | 89 | 94 | 56 | 71.2 | 72 | 82 | 57 | 1.7 | 0.43 | 0.42 | 0.45 | 0.65 | 0.74 | 0.57 | 0.0 | 15.0 | 5.0 |
sec | 2001_09 | dssp | 1hno:A | 74.0 | 66 | 77 | 75 | 83 | 78 | 67 | 68.5 | 76 | 85 | 56 | 0.0 | 0.38 | 0.37 | 0.39 | 0.61 | 0.71 | 0.48 | 100.0 | 4.0 | 2.0 |
sec | 2001_09 | dssp | 1ho8:A | 79.2 | 90 | 81 | 0 | 0 | 60 | 80 | 66.8 | 78 | 100 | 53 | 0.0 | 0.27 | 0.28 | 0.27 | 0.59 | 1.0 | 0.54 | 100.0 | 7.0 | 1.0 |
sec | 2001_09 | dssp | 1hrk:A | 82.2 | 76 | 95 | 73 | 95 | 93 | 68 | 78.9 | 75 | 88 | 81 | 0.2 | 0.51 | 0.50 | 0.52 | 0.74 | 0.81 | 0.67 | 100.0 | 9.0 | 3.0 |
sec | 2001_09 | dssp | 1hze:A | 75.3 | 46 | 46 | 71 | 90 | 88 | 72 | 80.5 | 46 | 90 | 81 | 5.1 | 0.35 | 0.35 | 0.35 | 0.37 | 0.68 | 0.62 | 100.0 | 0.00 | 9.0 |
sec | 2001_09 | dssp | 1i18:A | 77.3 | 66 | 46 | 68 | 90 | 88 | 76 | 86.2 | 66 | 88 | 87 | 5.1 | 0.35 | 0.36 | 0.35 | 0.50 | 0.65 | 0.65 | 100.0 | 4.0 | 11.0 |
sec | 2001_09 | dssp | 1i8a:A | 77.8 | 0 | 0 | 75 | 91 | 93 | 69 | 78.3 | 0 | 89 | 79 | 0.0 | 0.37 | 0.32 | 0.43 | 1.0 | 0.70 | 0.59 | 100.0 | 7.0 | 8.0 |
sec | 2001_09 | dssp | 1i9g:A | 78.0 | 76 | 84 | 70 | 80 | 84 | 73 | 77.4 | 83 | 77 | 73 | 2.2 | 0.39 | 0.39 | 0.40 | 0.73 | 0.65 | 0.60 | 100.0 | 2.0 | 3.0 |
sec | 2001_09 | dssp | 1iqp:A | 83.4 | 85 | 93 | 59 | 95 | 86 | 65 | 85.7 | 91 | 71 | 78 | 0.3 | 0.47 | 0.47 | 0.48 | 0.74 | 0.73 | 0.64 | 100.0 | 5.0 | 3.0 |
sec | 2001_09 | dssp | 1j75:A | 52.6 | 48 | 100 | 9 | 14 | 100 | 38 | 48.2 | 66 | 4 | 38 | 10.5 | 0.28 | 0.28 | 0.29 | 0.53 | -0.04 | 0.44 | 100.0 | 29.0 | 7.0 |
sec | 2001_09 | dssp | 1j7v:R | 77.6 | 0 | 0 | 69 | 90 | 93 | 70 | 75.1 | 0 | 76 | 81 | 0.0 | 0.33 | 0.28 | 0.38 | 1.0 | 0.66 | 0.58 | 100.0 | 5.0 | 10.0 |
sec | 2001_09 | dssp | 1j8r:A | 61.7 | 0 | 0 | 48 | 88 | 83 | 54 | 61.8 | 0 | 65 | 59 | 2.5 | 0.13 | 0.14 | 0.13 | -0.03 | 0.42 | 0.35 | 0.0 | 3.0 | 26.0 |
sec | 2001_09 | dssp | 1j9y:A | 75.2 | 73 | 81 | 55 | 59 | 81 | 75 | 69.2 | 81 | 55 | 65 | 2.4 | 0.30 | 0.30 | 0.31 | 0.65 | 0.50 | 0.55 | 100.0 | 3.0 | 0.00 |
sec | 2001_09 | dssp | 1jce:A | 73.0 | 81 | 83 | 56 | 88 | 76 | 56 | 67.9 | 75 | 58 | 66 | 1.5 | 0.37 | 0.37 | 0.38 | 0.71 | 0.62 | 0.46 | 0.0 | 0.00 | 10.0 |
sec | 2001_09 | dssp | 1jcg:A | 73.7 | 79 | 80 | 58 | 90 | 80 | 60 | 72.8 | 81 | 65 | 68 | 2.3 | 0.36 | 0.36 | 0.37 | 0.68 | 0.64 | 0.51 | 0.0 | 0.00 | 10.0 |
sec | 2001_09 | dssp | 1jma:A | 73.7 | 52 | 75 | 62 | 80 | 86 | 71 | 61.2 | 52 | 72 | 57 | 0.3 | 0.30 | 0.28 | 0.33 | 0.57 | 0.60 | 0.48 | 100.0 | 5.0 | 6.0 |
sec | 2001_09 | dssp | 1jmt:A | 55.4 | 48 | 77 | 40 | 85 | 91 | 35 | 64.4 | 72 | 40 | 75 | 7.1 | 0.24 | 0.23 | 0.25 | 0.35 | 0.50 | 0.38 | 100.0 | 19.0 | 14.0 |
sec | 2001_09 | dssp | 1jnx:X | 78.3 | 79 | 85 | 62 | 74 | 83 | 75 | 78.1 | 82 | 69 | 78 | 0.9 | 0.39 | 0.39 | 0.40 | 0.73 | 0.61 | 0.58 | 100.0 | 2.0 | 2.0 |
sec | 2001_09 | dssp | 1jr3:A | 87.7 | 94 | 87 | 71 | 90 | 81 | 87 | 86.1 | 87 | 76 | 86 | 0.8 | 0.53 | 0.52 | 0.55 | 0.79 | 0.79 | 0.75 | 100.0 | 4.0 | 1.0 |
sec | 2001_09 | dssp | 1jr3:D | 82.5 | 95 | 82 | 65 | 96 | 67 | 78 | 85.3 | 93 | 76 | 75 | 0.0 | 0.50 | 0.47 | 0.53 | 0.73 | 0.77 | 0.60 | 100.0 | 8.0 | 3.0 |
sec | 2001_09 | dssp | 1jx3:A | 77.0 | 77 | 81 | 58 | 70 | 82 | 76 | 74.4 | 82 | 64 | 73 | 0.0 | 0.37 | 0.37 | 0.39 | 0.71 | 0.57 | 0.53 | 100.0 | 1.0 | 2.0 |
sec | 2001_09 | dssp | 1jx5:A | 80.8 | 0 | 0 | 66 | 71 | 88 | 84 | 79.8 | 0 | 73 | 83 | 0.6 | 0.25 | 0.24 | 0.27 | 1.0 | 0.55 | 0.57 | 100.0 | 0.00 | 1.0 |
sec | 2001_09 | dssp | 1jzt:A | 78.6 | 68 | 83 | 76 | 87 | 87 | 73 | 71.7 | 76 | 81 | 64 | 0.4 | 0.41 | 0.40 | 0.43 | 0.63 | 0.78 | 0.59 | 100.0 | 6.0 | 2.0 |
sec | 2001_09 | dssp | THIS_month:psum | 74.3 | 56 | 65 | 53 | 71 | 85 | 67 | 71.9 | 60.4 | 66.1 | 69.8 | 2.2 | 0.35 | 0.34 | 0.35 | 0.65 | 0.59 | 0.54 | 78.7 | 6.8 | 7.4 |
sec | 2001_09 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |