METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2001_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_08 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2001_08 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2001_08 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2001_08 | dssp | THIS_month:psum | 74.9 | 79 | 66 | 46 | 57 | 67 | 72 | 71.3 | 77.9 | 67.5 | 62.7 | 2.9 | 0.35 | 0.35 | 0.35 | 0.60 | 0.65 | 0.53 | 79.4 | 8.4 | 5.0 |
sec | 2001_08 | dssp | 1e5r:A | 75.0 | 100 | 61 | 76 | 100 | 55 | 76 | 68.9 | 100 | 100 | 40 | 0.0 | 0.57 | 0.56 | 0.58 | 0.67 | 0.83 | 0.47 | 100.0 | 18.0 | 6.0 |
sec | 2001_08 | dssp | 1e5s:A | 67.7 | 95 | 57 | 50 | 77 | 60 | 75 | 57.7 | 80 | 58 | 46 | 3.0 | 0.31 | 0.31 | 0.32 | 0.62 | 0.53 | 0.42 | 100.0 | 17.0 | 8.0 |
sec | 2001_08 | dssp | 1e6f:A | 82.5 | 0 | 0 | 79 | 85 | 89 | 80 | 77.7 | 0 | 82 | 78 | 0.0 | 0.36 | 0.34 | 0.40 | 1.0 | 0.69 | 0.64 | 100.0 | 2.0 | 2.0 |
sec | 2001_08 | dssp | 1g2r:A | 78.7 | 100 | 77 | 50 | 69 | 71 | 84 | 63.3 | 50 | 62 | 76 | 4.2 | 0.45 | 0.44 | 0.47 | 0.78 | 0.50 | 0.64 | 100.0 | 11.0 | 5.0 |
sec | 2001_08 | dssp | 1h70:A | 77.6 | 79 | 82 | 76 | 77 | 76 | 74 | 75.5 | 81 | 83 | 68 | 0.3 | 0.41 | 0.42 | 0.42 | 0.73 | 0.69 | 0.55 | 100.0 | 1.0 | 0.00 |
sec | 2001_08 | dssp | 1h75:A | 88.2 | 92 | 89 | 94 | 84 | 80 | 89 | 97.4 | 100 | 100 | 93 | 0.0 | 0.63 | 0.64 | 0.63 | 0.86 | 0.85 | 0.75 | 100.0 | 1.0 | 2.0 |
sec | 2001_08 | dssp | 1h7y:A | 78.0 | 100 | 69 | 58 | 75 | 76 | 86 | 75.7 | 95 | 67 | 70 | 4.1 | 0.43 | 0.44 | 0.44 | 0.76 | 0.57 | 0.64 | 100.0 | 11.0 | 5.0 |
sec | 2001_08 | dssp | 1hi9:A | 77.7 | 96 | 72 | 69 | 87 | 68 | 79 | 79.4 | 93 | 83 | 67 | 1.0 | 0.46 | 0.46 | 0.47 | 0.74 | 0.71 | 0.56 | 0.0 | 10.0 | 5.0 |
sec | 2001_08 | dssp | 1hy9:A | 61.0 | 0 | 0 | 0 | 0 | 80 | 78 | 32.8 | 100 | 0 | 43 | 7.3 | 0.01 | 0.01 | 0.01 | 1.0 | 1.0 | 0.11 | 100.0 | 21.0 | 24.0 |
sec | 2001_08 | dssp | 1i19:A | 74.1 | 75 | 60 | 60 | 75 | 81 | 78 | 71.5 | 73 | 68 | 72 | 4.7 | 0.31 | 0.32 | 0.32 | 0.59 | 0.56 | 0.57 | 100.0 | 4.0 | 5.0 |
sec | 2001_08 | dssp | 1i42:A | 87.6 | 100 | 70 | 84 | 95 | 86 | 91 | 88.3 | 89 | 92 | 86 | 0.0 | 0.63 | 0.65 | 0.62 | 0.80 | 0.85 | 0.75 | 100.0 | 6.0 | 3.0 |
sec | 2001_08 | dssp | 1i5k:C | 69.2 | 85 | 78 | 0 | 0 | 0 | 0 | 55.2 | 61 | 100 | 0 | 0.0 | 0.06 | 0.05 | 0.07 | -0.17 | 1.0 | -0.17 | 100.0 | 7.0 | 0.00 |
sec | 2001_08 | dssp | 1ic3:A | 69.3 | 88 | 60 | 58 | 78 | 62 | 75 | 74.3 | 85 | 65 | 71 | 1.6 | 0.30 | 0.30 | 0.31 | 0.59 | 0.60 | 0.42 | 100.0 | 13.0 | 5.0 |
sec | 2001_08 | dssp | 1ihr:A | 75.3 | 100 | 57 | 72 | 96 | 66 | 66 | 88.6 | 100 | 94 | 73 | 2.7 | 0.45 | 0.47 | 0.44 | 0.69 | 0.72 | 0.50 | 100.0 | 12.0 | 12.0 |
sec | 2001_08 | dssp | 1ip9:A | 72.9 | 76 | 64 | 61 | 68 | 76 | 80 | 80.5 | 100 | 59 | 81 | 5.8 | 0.31 | 0.32 | 0.32 | 0.58 | 0.54 | 0.57 | 100.0 | 4.0 | 2.0 |
sec | 2001_08 | dssp | 1ipg:A | 74.1 | 76 | 64 | 63 | 73 | 78 | 80 | 82.7 | 100 | 65 | 83 | 5.8 | 0.33 | 0.33 | 0.33 | 0.58 | 0.58 | 0.60 | 100.0 | 4.0 | 3.0 |
sec | 2001_08 | dssp | 1j7l:A | 78.3 | 92 | 76 | 60 | 91 | 73 | 76 | 79.2 | 88 | 77 | 71 | 1.5 | 0.42 | 0.41 | 0.44 | 0.71 | 0.69 | 0.58 | 100.0 | 8.0 | 6.0 |
sec | 2001_08 | dssp | 1jb0:C | 52.5 | 30 | 26 | 35 | 46 | 64 | 61 | 45.0 | 38 | 48 | 45 | 0.0 | 0.10 | 0.10 | 0.10 | 0.13 | 0.26 | -0.02 | 100.0 | 2.0 | 4.0 |
sec | 2001_08 | dssp | 1jb0:D | 68.1 | 60 | 53 | 48 | 67 | 81 | 73 | 57.0 | 51 | 59 | 57 | 5.7 | 0.18 | 0.18 | 0.19 | 0.46 | 0.44 | 0.47 | 100.0 | 2.0 | 7.0 |
sec | 2001_08 | dssp | 1jb0:F | 63.8 | 70 | 81 | 28 | 14 | 58 | 54 | 64.0 | 78 | 7 | 50 | 2.1 | 0.15 | 0.17 | 0.15 | 0.48 | 0.14 | 0.28 | 0.0 | 7.0 | 4.0 |
sec | 2001_08 | dssp | 1jb0:I | 63.2 | 64 | 80 | 0 | 0 | 66 | 66 | 56.1 | 66 | 0 | 46 | 15.7 | 0.25 | 0.29 | 0.21 | 0.31 | -0.07 | 0.51 | 100.0 | 13.0 | 13.0 |
sec | 2001_08 | dssp | 1jb0:J | 85.4 | 92 | 86 | 0 | 0 | 75 | 81 | 71.9 | 85 | 0 | 57 | 2.4 | 0.37 | 0.34 | 0.41 | 0.65 | 1.0 | 0.69 | 100.0 | 4.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:K | 76.1 | 100 | 74 | 0 | 0 | 45 | 100 | 84.8 | 100 | 100 | 65 | 0.0 | 0.37 | 0.37 | 0.38 | 0.63 | 1.0 | 0.56 | 100.0 | 19.0 | 4.0 |
sec | 2001_08 | dssp | 1jb0:L | 62.3 | 63 | 86 | 0 | 0 | 69 | 45 | 44.6 | 42 | 0 | 56 | 5.9 | 0.13 | 0.14 | 0.12 | 0.39 | -0.05 | 0.33 | 0.0 | 18.0 | 3.0 |
sec | 2001_08 | dssp | 1jb0:M | 100.0 | 100 | 100 | 0 | 0 | 100 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 100.0 | 0.00 | 0.00 |
sec | 2001_08 | dssp | 1jb0:X | 82.8 | 100 | 80 | 0 | 0 | 37 | 100 | 86.2 | 100 | 100 | 50 | 0.0 | 0.35 | 0.25 | 0.45 | 0.55 | 1.0 | 0.55 | 100.0 | 17.0 | 0.00 |
sec | 2001_08 | dssp | 1jc7:A | 59.7 | 63 | 41 | 49 | 86 | 68 | 61 | 57.4 | 52 | 64 | 55 | 12.4 | 0.17 | 0.17 | 0.17 | 0.31 | 0.51 | 0.41 | 0.0 | 12.0 | 17.0 |
sec | 2001_08 | dssp | 1je5:A | 72.9 | 100 | 63 | 61 | 74 | 72 | 77 | 69.3 | 94 | 68 | 62 | 4.4 | 0.35 | 0.37 | 0.35 | 0.74 | 0.51 | 0.54 | 100.0 | 9.0 | 6.0 |
sec | 2001_08 | dssp | 1jeq:A | 80.5 | 88 | 78 | 72 | 86 | 77 | 79 | 78.2 | 81 | 81 | 73 | 2.0 | 0.44 | 0.44 | 0.45 | 0.73 | 0.73 | 0.63 | 0.0 | 4.0 | 3.0 |
sec | 2001_08 | dssp | 1jeq:B | 74.8 | 79 | 75 | 63 | 83 | 78 | 70 | 74.0 | 74 | 75 | 73 | 3.4 | 0.34 | 0.34 | 0.35 | 0.65 | 0.65 | 0.55 | 0.0 | 1.0 | 6.0 |
sec | 2001_08 | dssp | 1jey:B | 75.1 | 81 | 74 | 63 | 83 | 77 | 71 | 74.6 | 76 | 75 | 72 | 3.2 | 0.34 | 0.34 | 0.35 | 0.66 | 0.64 | 0.55 | 0.0 | 2.0 | 6.0 |
sec | 2001_08 | dssp | 1jj2:G | 79.3 | 100 | 79 | 0 | 0 | 0 | 0 | 50.7 | 63 | 100 | 0 | 0.0 | 0.00 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 100.0 | 20.0 | 0.00 |
sec | 2001_08 | dssp | 1jjy:A | 80.4 | 87 | 85 | 61 | 71 | 76 | 75 | 78.8 | 85 | 70 | 72 | 1.8 | 0.38 | 0.38 | 0.39 | 0.70 | 0.62 | 0.61 | 100.0 | 1.0 | 1.0 |
sec | 2001_08 | dssp | 1jru:A | 84.3 | 80 | 60 | 88 | 100 | 83 | 87 | 83.8 | 70 | 96 | 81 | 0.0 | 0.58 | 0.59 | 0.57 | 0.62 | 0.91 | 0.68 | 100.0 | 5.0 | 3.0 |
sec | 2001_08 | dssp | THIS_month:psum | 74.9 | 79 | 66 | 46 | 57 | 67 | 72 | 71.3 | 77.9 | 67.5 | 62.7 | 2.9 | 0.35 | 0.35 | 0.35 | 0.60 | 0.65 | 0.53 | 79.4 | 8.4 | 5.0 |
sec | 2001_08 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2001_08 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2001_08 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |