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EVA sec results for: PHD month: 2001_08

METHOD about:	../../../doc/explain_methods.html#PX_about_phd
METHOD url:	PHD
TYPE :	sec
NPROT :	1599
NWEEKS :	109
NOTE 1 :	here ALL results obtained for PHD in month 2001_08 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2001_08 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2001_08	dssp	ALL_proteins:psum	70.9	74	76	60	63	72	69	66.9	66.2	65.3	63.5	4.2	0.28	0.28	0.28	0.61	0.52	0.48	7542.2	7.8	6.1
sec	2001_08	dssp	ALL_proteins:sig	10.8	31	31	30	32	14	12	14.2	27.8	26.4	14.8	5.1	0.24	0.27	0.22	0.25	0.26	0.15	7469.2	8.9	6.8
sec	2001_08	dssp	ALL_proteins:errsig	0.27	0.79	0.79	0.76	0.82	0.35	0.31	0.35	0.69	0.66	0.37	0.13	0.00	0.00	0.00	0.00	0.00	0.00	186.7	0.22	0.17
sec	2001_08	dssp	THIS_month:psum	69.8	69	61	41	52	69	72	66.9	70.1	58.2	63.4	5.2	0.28	0.27	0.29	0.58	0.52	0.47	84.4	9.6	6.1

sec	2001_08	dssp	1e5r:A	56.7	53	77	40	50	66	47	69.3	76	57	66	0.0	0.19	0.19	0.20	0.45	0.35	0.16	100.0	13.0	3.0
sec	2001_08	dssp	1e5s:A	63.3	53	100	40	50	83	52	72.1	76	57	73	0.0	0.31	0.30	0.34	0.63	0.35	0.33	100.0	20.0	3.0
sec	2001_08	dssp	1e6f:A	62.0	0	0	64	64	65	68	54.4	0	61	52	4.6	0.13	0.14	0.13	-0.06	0.37	0.33	100.0	2.0	0.00
sec	2001_08	dssp	1e89:A	75.2	87	71	59	76	70	80	76.2	79	66	77	5.3	0.34	0.34	0.35	0.62	0.60	0.59	100.0	9.0	4.0
sec	2001_08	dssp	1fg3:A	79.9	80	82	78	69	80	81	78.8	70	84	85	3.1	0.40	0.41	0.41	0.69	0.68	0.65	100.0	1.0	1.0
sec	2001_08	dssp	1fm2:B	61.7	57	59	47	66	73	60	51.6	52	47	54	4.8	0.15	0.15	0.16	0.45	0.41	0.34	100.0	0.00	8.0
sec	2001_08	dssp	1g2r:A	72.3	92	63	22	80	76	85	64.9	63	22	87	12.7	0.33	0.29	0.37	0.56	0.36	0.68	100.0	18.0	13.0
sec	2001_08	dssp	1h70:A	72.2	72	81	77	63	69	72	72.6	75	72	70	2.3	0.32	0.32	0.32	0.67	0.59	0.48	100.0	3.0	5.0
sec	2001_08	dssp	1h75:A	88.2	96	96	70	85	90	82	89.5	100	76	87	0.0	0.65	0.65	0.67	0.94	0.72	0.76	0.0	0.00	3.0
sec	2001_08	dssp	1h7y:A	77.4	86	74	75	63	73	89	71.3	88	68	65	5.3	0.39	0.40	0.38	0.72	0.58	0.66	100.0	4.0	4.0
sec	2001_08	dssp	1hi9:A	55.5	56	50	50	53	57	61	54.8	70	58	44	10.5	0.09	0.09	0.09	0.29	0.36	0.30	100.0	4.0	1.0
sec	2001_08	dssp	1hqb:A	80.0	94	69	0	0	69	94	66.1	100	100	52	0.0	0.34	0.34	0.34	0.63	1.0	0.63	0.0	14.0	0.00
sec	2001_08	dssp	1hy9:A	58.5	0	0	30	75	67	84	45.0	100	30	49	7.3	0.09	0.12	0.08	1.0	0.38	0.24	100.0	29.0	14.0
sec	2001_08	dssp	1i19:A	65.8	61	54	42	57	79	74	68.0	68	50	75	9.6	0.18	0.18	0.18	0.43	0.35	0.50	100.0	3.0	6.0
sec	2001_08	dssp	1i42:A	74.2	100	58	60	71	74	84	64.6	85	62	61	3.3	0.35	0.37	0.35	0.71	0.53	0.55	100.0	11.0	4.0
sec	2001_08	dssp	1i5k:C	96.2	95	100	0	0	100	83	100.0	100	100	100	0.0	0.75	0.79	0.71	0.89	1.0	0.89	100.0	3.0	0.00
sec	2001_08	dssp	1i7c:A	72.8	69	83	61	87	85	62	69.2	73	71	65	0.3	0.36	0.35	0.38	0.70	0.60	0.49	100.0	3.0	11.0
sec	2001_08	dssp	1i7m:A	68.9	60	81	61	77	82	59	62.4	64	67	56	3.0	0.29	0.29	0.31	0.61	0.55	0.46	100.0	7.0	7.0
sec	2001_08	dssp	1i8n:A	51.7	0	0	56	48	68	53	43.4	0	50	55	6.7	0.03	0.02	0.04	1.0	0.22	0.18	100.0	17.0	5.0
sec	2001_08	dssp	1ic3:A	57.8	80	48	46	54	50	70	67.4	82	56	63	6.5	0.13	0.14	0.13	0.43	0.37	0.30	100.0	17.0	3.0
sec	2001_08	dssp	1ihr:A	72.6	100	70	59	100	79	55	83.5	100	78	83	0.0	0.52	0.54	0.52	0.80	0.64	0.45	100.0	6.0	20.0
sec	2001_08	dssp	1ip9:A	55.3	66	35	38	61	58	75	56.2	81	42	51	14.1	0.17	0.17	0.18	0.23	0.36	0.40	100.0	21.0	9.0
sec	2001_08	dssp	1ipg:A	55.3	66	35	36	61	59	75	58.3	81	50	52	15.2	0.18	0.18	0.18	0.23	0.34	0.41	100.0	21.0	10.0
sec	2001_08	dssp	1j7l:A	81.0	87	83	49	92	89	76	78.0	89	53	80	3.4	0.44	0.43	0.47	0.75	0.62	0.69	100.0	1.0	9.0
sec	2001_08	dssp	1jb0:C	67.5	0	0	82	56	80	72	62.8	0	82	72	1.2	0.22	0.18	0.27	1.0	0.57	0.31	100.0	16.0	10.0
sec	2001_08	dssp	1jb0:D	61.6	52	40	43	54	74	73	47.7	33	52	51	10.1	0.12	0.12	0.12	0.32	0.31	0.43	100.0	5.0	5.0
sec	2001_08	dssp	1jb0:F	63.1	69	80	28	12	58	56	58.3	64	6	54	4.2	0.12	0.13	0.11	0.45	0.12	0.30	0.0	7.0	6.0
sec	2001_08	dssp	1jb0:I	76.3	88	81	0	0	58	77	66.3	69	0	63	5.2	0.31	0.32	0.32	0.51	-0.03	0.55	100.0	5.0	2.0
sec	2001_08	dssp	1jb0:J	78.0	92	81	0	0	50	66	71.4	100	0	36	0.0	0.24	0.21	0.28	0.52	1.0	0.43	100.0	9.0	2.0
sec	2001_08	dssp	1jb0:K	62.5	75	60	0	0	50	80	74.0	79	100	68	6.2	0.15	0.17	0.14	0.25	1.0	0.40	100.0	12.0	6.0
sec	2001_08	dssp	1jb0:L	65.6	66	88	16	4	71	61	70.0	74	16	67	13.9	0.21	0.25	0.18	0.44	0.00	0.51	0.0	17.0	12.0
sec	2001_08	dssp	1jb0:M	96.8	100	96	0	0	83	100	100.0	100	100	100	0.0	0.76	0.72	0.80	0.89	1.0	0.89	100.0	3.0	0.00
sec	2001_08	dssp	1jb0:X	86.2	100	84	0	0	50	100	89.7	100	100	62	0.0	0.44	0.36	0.52	0.64	1.0	0.64	100.0	13.0	0.00
sec	2001_08	dssp	1jb3:A	57.5	41	40	72	72	52	53	44.6	38	60	33	7.0	0.15	0.16	0.16	0.21	0.56	0.24	100.0	0.00	0.00
sec	2001_08	dssp	1jc7:A	67.4	60	52	78	75	60	69	58.8	51	88	43	7.7	0.22	0.23	0.23	0.42	0.61	0.45	100.0	3.0	1.0
sec	2001_08	dssp	1jeq:A	66.4	75	65	58	62	61	70	71.5	77	75	64	8.0	0.20	0.21	0.21	0.48	0.49	0.45	0.0	6.0	1.0
sec	2001_08	dssp	1jeq:B	76.3	88	68	54	82	77	82	76.7	89	62	73	6.5	0.36	0.35	0.38	0.63	0.60	0.64	100.0	10.0	7.0
sec	2001_08	dssp	1jey:B	74.3	89	61	57	95	72	82	69.9	88	65	60	6.4	0.36	0.35	0.38	0.58	0.69	0.60	0.0	14.0	9.0
sec	2001_08	dssp	1jj2:G	89.7	95	91	0	0	66	80	71.0	72	100	66	0.0	0.38	0.36	0.40	0.66	1.0	0.66	100.0	3.0	0.00
sec	2001_08	dssp	1jjd:A	73.1	0	0	50	30	85	83	68.5	0	28	82	1.9	0.05	0.05	0.07	1.0	0.28	0.22	100.0	9.0	7.0
sec	2001_08	dssp	1jjy:A	75.0	81	85	52	50	72	69	69.3	71	58	68	3.3	0.29	0.29	0.29	0.65	0.45	0.53	100.0	2.0	0.00
sec	2001_08	dssp	1job:A	47.5	86	30	24	100	46	69	46.9	59	33	48	20.9	0.15	0.14	0.17	0.25	0.41	0.34	100.0	40.0	26.0
sec	2001_08	dssp	1jod:A	60.6	81	50	39	88	67	59	51.5	58	51	46	8.1	0.20	0.20	0.21	0.49	0.47	0.36	100.0	15.0	20.0
sec	2001_08	dssp	1jp4:A	71.8	93	82	0	0	68	55	67.5	98	0	43	3.8	0.36	0.31	0.42	0.68	-0.04	0.44	0.0	7.0	14.0
sec	2001_08	dssp	1jru:A	70.8	80	50	64	76	71	79	60.5	66	69	55	3.3	0.27	0.28	0.27	0.53	0.59	0.48	100.0	10.0	4.0

sec	2001_08	dssp	THIS_month:psum	69.8	69	61	41	52	69	72	66.9	70.1	58.2	63.4	5.2	0.28	0.27	0.29	0.58	0.52	0.47	84.4	9.6	6.1

sec	2001_08	dssp	ALL_proteins:psum	70.9	74	76	60	63	72	69	66.9	66.2	65.3	63.5	4.2	0.28	0.28	0.28	0.61	0.52	0.48	7542.2	7.8	6.1
sec	2001_08	dssp	ALL_proteins:sig	10.8	31	31	30	32	14	12	14.2	27.8	26.4	14.8	5.1	0.24	0.27	0.22	0.25	0.26	0.15	7469.2	8.9	6.8
sec	2001_08	dssp	ALL_proteins:errsig	0.27	0.79	0.79	0.76	0.82	0.35	0.31	0.35	0.69	0.66	0.37	0.13	0.00	0.00	0.00	0.00	0.00	0.00	186.7	0.22	0.17

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2001_08
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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