METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2001_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_08 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2001_08 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2001_08 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2001_08 | dssp | THIS_month:psum | 73.7 | 64 | 73 | 43 | 62 | 84 | 68 | 68.8 | 69.3 | 57.7 | 68.7 | 2.0 | 0.35 | 0.33 | 0.37 | 0.69 | 0.56 | 0.51 | 82.5 | 8.0 | 7.5 |
sec | 2001_08 | dssp | 1e5r:A | 63.3 | 69 | 81 | 0 | 0 | 83 | 52 | 46.9 | 50 | 0 | 59 | 0.0 | 0.26 | 0.20 | 0.32 | 0.59 | 1.0 | 0.33 | 100.0 | 6.0 | 16.0 |
sec | 2001_08 | dssp | 1e5s:A | 63.3 | 69 | 100 | 0 | 0 | 83 | 52 | 46.9 | 50 | 0 | 59 | 0.0 | 0.41 | 0.37 | 0.46 | 0.74 | -0.11 | 0.33 | 100.0 | 13.0 | 10.0 |
sec | 2001_08 | dssp | 1e6f:A | 76.0 | 0 | 0 | 75 | 79 | 83 | 73 | 76.1 | 0 | 82 | 77 | 0.0 | 0.26 | 0.24 | 0.30 | 1.0 | 0.60 | 0.52 | 100.0 | 4.0 | 2.0 |
sec | 2001_08 | dssp | 1e89:A | 72.5 | 68 | 77 | 48 | 85 | 87 | 66 | 63.5 | 63 | 53 | 68 | 4.1 | 0.30 | 0.29 | 0.32 | 0.56 | 0.59 | 0.55 | 100.0 | 4.0 | 8.0 |
sec | 2001_08 | dssp | 1fg3:A | 80.2 | 75 | 85 | 76 | 87 | 85 | 74 | 74.0 | 82 | 86 | 63 | 0.2 | 0.44 | 0.44 | 0.45 | 0.68 | 0.79 | 0.61 | 100.0 | 4.0 | 1.0 |
sec | 2001_08 | dssp | 1fm2:B | 71.3 | 68 | 84 | 46 | 86 | 89 | 63 | 60.3 | 73 | 52 | 58 | 0.3 | 0.34 | 0.31 | 0.37 | 0.69 | 0.53 | 0.48 | 100.0 | 4.0 | 13.0 |
sec | 2001_08 | dssp | 1g2r:A | 68.1 | 63 | 80 | 72 | 72 | 71 | 58 | 65.0 | 59 | 71 | 67 | 0.0 | 0.31 | 0.31 | 0.32 | 0.55 | 0.65 | 0.36 | 100.0 | 8.0 | 0.00 |
sec | 2001_08 | dssp | 1g8p:A | 74.8 | 71 | 93 | 54 | 80 | 89 | 58 | 68.5 | 78 | 63 | 55 | 0.9 | 0.36 | 0.36 | 0.37 | 0.67 | 0.61 | 0.54 | 100.0 | 12.0 | 4.0 |
sec | 2001_08 | dssp | 1h70:A | 71.4 | 60 | 90 | 63 | 74 | 83 | 63 | 65.0 | 65 | 71 | 61 | 0.0 | 0.35 | 0.33 | 0.37 | 0.66 | 0.59 | 0.45 | 100.0 | 10.0 | 3.0 |
sec | 2001_08 | dssp | 1h75:A | 85.5 | 89 | 96 | 70 | 85 | 90 | 77 | 89.8 | 100 | 76 | 87 | 0.0 | 0.58 | 0.58 | 0.60 | 0.88 | 0.72 | 0.71 | 0.0 | 2.0 | 3.0 |
sec | 2001_08 | dssp | 1h7y:A | 80.4 | 79 | 87 | 60 | 69 | 90 | 81 | 73.1 | 70 | 63 | 79 | 4.7 | 0.42 | 0.42 | 0.44 | 0.77 | 0.54 | 0.70 | 100.0 | 2.0 | 2.0 |
sec | 2001_08 | dssp | 1hi9:A | 80.7 | 89 | 83 | 66 | 83 | 82 | 77 | 81.6 | 90 | 82 | 75 | 1.4 | 0.46 | 0.46 | 0.47 | 0.79 | 0.67 | 0.63 | 0.0 | 2.0 | 5.0 |
sec | 2001_08 | dssp | 1hqb:A | 88.8 | 100 | 79 | 0 | 0 | 80 | 100 | 79.2 | 100 | 100 | 68 | 0.0 | 0.59 | 0.59 | 0.59 | 0.79 | 1.0 | 0.79 | 0.0 | 11.0 | 0.00 |
sec | 2001_08 | dssp | 1hy9:A | 75.6 | 0 | 0 | 10 | 50 | 96 | 76 | 33.6 | 100 | 15 | 39 | 0.0 | 0.02 | 0.01 | 0.04 | 1.0 | 0.13 | 0.13 | 100.0 | 0.00 | 19.0 |
sec | 2001_08 | dssp | 1i42:A | 87.6 | 92 | 81 | 76 | 95 | 92 | 86 | 90.9 | 95 | 92 | 89 | 0.0 | 0.59 | 0.59 | 0.60 | 0.84 | 0.80 | 0.74 | 100.0 | 2.0 | 5.0 |
sec | 2001_08 | dssp | 1i7c:A | 69.7 | 50 | 89 | 54 | 80 | 94 | 61 | 67.1 | 51 | 70 | 71 | 3.8 | 0.31 | 0.29 | 0.35 | 0.61 | 0.51 | 0.54 | 100.0 | 8.0 | 12.0 |
sec | 2001_08 | dssp | 1i7m:A | 65.2 | 51 | 88 | 49 | 82 | 90 | 53 | 55.5 | 51 | 61 | 53 | 1.8 | 0.27 | 0.25 | 0.30 | 0.59 | 0.51 | 0.43 | 100.0 | 11.0 | 14.0 |
sec | 2001_08 | dssp | 1i8n:A | 53.9 | 18 | 100 | 21 | 70 | 92 | 50 | 34.5 | 25 | 25 | 44 | 0.0 | 0.14 | 0.10 | 0.20 | 0.39 | 0.25 | 0.19 | 100.0 | 14.0 | 24.0 |
sec | 2001_08 | dssp | 1ic3:A | 71.3 | 90 | 70 | 48 | 62 | 70 | 75 | 76.4 | 96 | 57 | 73 | 1.9 | 0.31 | 0.31 | 0.32 | 0.70 | 0.44 | 0.46 | 100.0 | 7.0 | 5.0 |
sec | 2001_08 | dssp | 1ihr:A | 67.1 | 100 | 60 | 54 | 95 | 70 | 53 | 82.8 | 100 | 78 | 81 | 2.7 | 0.38 | 0.40 | 0.37 | 0.72 | 0.56 | 0.38 | 100.0 | 10.0 | 21.0 |
sec | 2001_08 | dssp | 1ip9:A | 72.9 | 61 | 92 | 85 | 62 | 72 | 73 | 71.3 | 85 | 80 | 62 | 0.0 | 0.39 | 0.39 | 0.40 | 0.70 | 0.62 | 0.45 | 100.0 | 8.0 | 9.0 |
sec | 2001_08 | dssp | 1ipg:A | 78.8 | 61 | 92 | 86 | 76 | 83 | 76 | 85.8 | 85 | 88 | 84 | 0.0 | 0.45 | 0.45 | 0.47 | 0.70 | 0.73 | 0.57 | 100.0 | 8.0 | 3.0 |
sec | 2001_08 | dssp | 1j7l:A | 84.8 | 87 | 95 | 60 | 91 | 93 | 75 | 82.4 | 89 | 77 | 78 | 0.0 | 0.57 | 0.55 | 0.59 | 0.86 | 0.69 | 0.71 | 100.0 | 3.0 | 6.0 |
sec | 2001_08 | dssp | 1jb0:C | 65.0 | 0 | 0 | 11 | 100 | 100 | 64 | 20.5 | 0 | 17 | 26 | 0.0 | 0.19 | 0.04 | 0.34 | 1.0 | 0.30 | 0.20 | 100.0 | 16.0 | 18.0 |
sec | 2001_08 | dssp | 1jb0:D | 69.6 | 48 | 48 | 48 | 70 | 87 | 75 | 58.3 | 36 | 56 | 66 | 8.6 | 0.21 | 0.21 | 0.23 | 0.36 | 0.46 | 0.56 | 100.0 | 0.00 | 8.0 |
sec | 2001_08 | dssp | 1jb0:F | 63.1 | 55 | 90 | 28 | 10 | 79 | 58 | 59.3 | 64 | 6 | 58 | 7.8 | 0.17 | 0.18 | 0.16 | 0.48 | 0.10 | 0.43 | 0.0 | 21.0 | 8.0 |
sec | 2001_08 | dssp | 1jb0:J | 90.2 | 89 | 100 | 0 | 0 | 100 | 75 | 95.1 | 100 | 0 | 91 | 0.0 | 0.63 | 0.61 | 0.65 | 0.85 | 1.0 | 0.80 | 100.0 | 7.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:K | 75.0 | 87 | 70 | 0 | 0 | 62 | 83 | 90.0 | 95 | 100 | 84 | 0.0 | 0.21 | 0.20 | 0.21 | 0.51 | 1.0 | 0.51 | 100.0 | 12.0 | 0.00 |
sec | 2001_08 | dssp | 1jb0:L | 58.3 | 46 | 96 | 0 | 0 | 95 | 42 | 47.3 | 46 | 0 | 55 | 3.9 | 0.17 | 0.18 | 0.17 | 0.41 | -0.04 | 0.41 | 0.0 | 35.0 | 0.00 |
sec | 2001_08 | dssp | 1jb0:X | 93.1 | 100 | 91 | 0 | 0 | 75 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 0.64 | 0.60 | 0.69 | 0.82 | 1.0 | 0.82 | 100.0 | 6.0 | 0.00 |
sec | 2001_08 | dssp | 1jb3:A | 63.0 | 38 | 60 | 62 | 73 | 79 | 57 | 56.1 | 39 | 67 | 57 | 7.0 | 0.16 | 0.16 | 0.18 | 0.35 | 0.50 | 0.42 | 100.0 | 8.0 | 5.0 |
sec | 2001_08 | dssp | 1jc7:A | 59.7 | 40 | 52 | 58 | 71 | 72 | 54 | 55.0 | 40 | 64 | 55 | 7.7 | 0.13 | 0.13 | 0.13 | 0.31 | 0.45 | 0.35 | 100.0 | 5.0 | 6.0 |
sec | 2001_08 | dssp | 1jeq:A | 77.6 | 77 | 85 | 58 | 96 | 87 | 67 | 75.3 | 87 | 75 | 64 | 0.4 | 0.43 | 0.41 | 0.45 | 0.71 | 0.70 | 0.58 | 0.0 | 3.0 | 8.0 |
sec | 2001_08 | dssp | 1jeq:B | 80.5 | 76 | 83 | 62 | 88 | 91 | 76 | 83.8 | 85 | 74 | 87 | 3.5 | 0.42 | 0.41 | 0.44 | 0.69 | 0.69 | 0.69 | 100.0 | 2.0 | 5.0 |
sec | 2001_08 | dssp | 1jey:B | 78.9 | 81 | 86 | 57 | 82 | 88 | 73 | 83.4 | 92 | 73 | 82 | 1.7 | 0.44 | 0.43 | 0.46 | 0.76 | 0.61 | 0.62 | 0.0 | 1.0 | 7.0 |
sec | 2001_08 | dssp | 1jjd:A | 75.0 | 0 | 0 | 0 | 0 | 95 | 81 | 62.9 | 0 | 0 | 79 | 3.8 | 0.13 | 0.08 | 0.19 | 1.0 | -0.10 | 0.20 | 100.0 | 9.0 | 3.0 |
sec | 2001_08 | dssp | 1jjy:A | 77.1 | 74 | 92 | 55 | 63 | 87 | 65 | 70.4 | 68 | 60 | 76 | 1.7 | 0.36 | 0.36 | 0.37 | 0.69 | 0.55 | 0.58 | 100.0 | 10.0 | 1.0 |
sec | 2001_08 | dssp | 1job:A | 67.3 | 91 | 50 | 47 | 100 | 71 | 70 | 69.4 | 87 | 61 | 66 | 7.4 | 0.32 | 0.32 | 0.33 | 0.56 | 0.60 | 0.48 | 100.0 | 17.0 | 18.0 |
sec | 2001_08 | dssp | 1jod:A | 66.9 | 89 | 53 | 46 | 100 | 71 | 65 | 67.1 | 81 | 60 | 64 | 6.8 | 0.31 | 0.31 | 0.33 | 0.57 | 0.59 | 0.46 | 100.0 | 15.0 | 19.0 |
sec | 2001_08 | dssp | 1jp4:A | 85.9 | 95 | 97 | 41 | 83 | 90 | 68 | 88.8 | 97 | 54 | 89 | 0.0 | 0.62 | 0.60 | 0.65 | 0.92 | 0.54 | 0.69 | 100.0 | 1.0 | 7.0 |
sec | 2001_08 | dssp | THIS_month:psum | 73.7 | 64 | 73 | 43 | 62 | 84 | 68 | 68.8 | 69.3 | 57.7 | 68.7 | 2.0 | 0.35 | 0.33 | 0.37 | 0.69 | 0.56 | 0.51 | 82.5 | 8.0 | 7.5 |
sec | 2001_08 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2001_08 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2001_08 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |