METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2001_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_07 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_07 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2001_07 | dssp | THIS_month:psum | 77.1 | 76 | 81 | 44 | 50 | 80 | 70 | 71.5 | 72.5 | 64.7 | 67.4 | 3.1 | 0.36 | 0.38 | 0.36 | 0.63 | 0.66 | 0.57 | 91.6 | 6.6 | 5.3 |
sec | 2001_07 | dssp | 1dcj:A | 91.4 | 78 | 100 | 95 | 95 | 97 | 86 | 87.0 | 64 | 100 | 100 | 0.0 | 0.73 | 0.72 | 0.75 | 0.84 | 0.93 | 0.83 | 100.0 | 6.0 | 0.00 |
sec | 2001_07 | dssp | 1e44:B | 63.5 | 27 | 42 | 30 | 75 | 89 | 63 | 34.5 | 15 | 37 | 36 | 1.0 | 0.11 | 0.09 | 0.14 | 0.27 | 0.35 | 0.25 | 100.0 | 4.0 | 18.0 |
sec | 2001_07 | dssp | 1faz:A | 71.3 | 58 | 95 | 0 | 0 | 93 | 60 | 47.2 | 38 | 100 | 68 | 4.0 | 0.25 | 0.29 | 0.23 | 0.53 | 1.0 | 0.56 | 0.0 | 24.0 | 4.0 |
sec | 2001_07 | dssp | 1g7o:A | 80.5 | 82 | 90 | 68 | 61 | 78 | 71 | 75.2 | 72 | 75 | 81 | 0.9 | 0.38 | 0.39 | 0.38 | 0.70 | 0.61 | 0.60 | 100.0 | 4.0 | 0.00 |
sec | 2001_07 | dssp | 1gc5:A | 75.4 | 87 | 81 | 57 | 67 | 68 | 69 | 75.9 | 87 | 59 | 68 | 4.0 | 0.34 | 0.34 | 0.35 | 0.70 | 0.54 | 0.53 | 100.0 | 3.0 | 2.0 |
sec | 2001_07 | dssp | 1h5p:A | 65.3 | 41 | 75 | 63 | 53 | 81 | 67 | 56.9 | 46 | 64 | 58 | 8.4 | 0.18 | 0.18 | 0.19 | 0.43 | 0.44 | 0.48 | 100.0 | 13.0 | 4.0 |
sec | 2001_07 | dssp | 1hq0:A | 67.1 | 57 | 60 | 54 | 75 | 82 | 64 | 60.2 | 59 | 63 | 57 | 5.7 | 0.21 | 0.20 | 0.22 | 0.50 | 0.47 | 0.47 | 100.0 | 1.0 | 10.0 |
sec | 2001_07 | dssp | 1hr6:A | 86.4 | 92 | 89 | 75 | 87 | 84 | 82 | 83.8 | 92 | 80 | 76 | 0.2 | 0.56 | 0.56 | 0.57 | 0.84 | 0.77 | 0.72 | 100.0 | 1.0 | 2.0 |
sec | 2001_07 | dssp | 1hr7:A | 86.7 | 92 | 89 | 76 | 87 | 84 | 82 | 84.3 | 92 | 81 | 77 | 0.2 | 0.57 | 0.57 | 0.58 | 0.84 | 0.78 | 0.72 | 100.0 | 1.0 | 2.0 |
sec | 2001_07 | dssp | 1hr8:A | 88.5 | 92 | 92 | 78 | 91 | 89 | 84 | 86.4 | 91 | 79 | 85 | 0.0 | 0.62 | 0.62 | 0.63 | 0.86 | 0.81 | 0.76 | 100.0 | 0.00 | 2.0 |
sec | 2001_07 | dssp | 1hr9:A | 88.5 | 92 | 91 | 80 | 91 | 88 | 85 | 87.2 | 91 | 80 | 86 | 0.0 | 0.62 | 0.62 | 0.63 | 0.86 | 0.82 | 0.76 | 100.0 | 0.00 | 2.0 |
sec | 2001_07 | dssp | 1hzg:A | 67.1 | 57 | 60 | 54 | 75 | 82 | 64 | 60.2 | 59 | 63 | 57 | 5.7 | 0.21 | 0.20 | 0.22 | 0.50 | 0.47 | 0.47 | 100.0 | 1.0 | 10.0 |
sec | 2001_07 | dssp | 1i3j:A | 63.5 | 41 | 76 | 54 | 27 | 77 | 73 | 53.5 | 38 | 51 | 65 | 8.3 | 0.14 | 0.14 | 0.14 | 0.43 | 0.27 | 0.42 | 100.0 | 14.0 | 11.0 |
sec | 2001_07 | dssp | 1ijx:A | 75.2 | 78 | 86 | 16 | 33 | 84 | 71 | 60.6 | 61 | 25 | 65 | 0.0 | 0.33 | 0.32 | 0.36 | 0.71 | 0.18 | 0.51 | 100.0 | 4.0 | 4.0 |
sec | 2001_07 | dssp | 1ijy:A | 78.7 | 78 | 89 | 0 | 0 | 87 | 76 | 70.1 | 70 | 0 | 77 | 0.8 | 0.36 | 0.35 | 0.39 | 0.73 | -0.04 | 0.59 | 100.0 | 4.0 | 2.0 |
sec | 2001_07 | dssp | 1j8f:A | 71.1 | 69 | 80 | 100 | 62 | 64 | 64 | 81.8 | 79 | 100 | 79 | 2.2 | 0.32 | 0.34 | 0.32 | 0.51 | 0.76 | 0.43 | 100.0 | 6.0 | 6.0 |
sec | 2001_07 | dssp | 1jc5:A | 79.3 | 100 | 71 | 71 | 86 | 77 | 79 | 83.9 | 100 | 83 | 78 | 1.3 | 0.47 | 0.48 | 0.47 | 0.80 | 0.67 | 0.60 | 100.0 | 7.0 | 6.0 |
sec | 2001_07 | dssp | 1jei:A | 77.4 | 75 | 71 | 0 | 0 | 78 | 92 | 100.0 | 100 | 100 | 100 | 5.6 | 0.32 | 0.37 | 0.28 | 0.56 | 1.0 | 0.66 | 100.0 | 1.0 | 7.0 |
sec | 2001_07 | dssp | 1jek:A | 72.5 | 71 | 100 | 0 | 0 | 100 | 40 | 34.5 | 34 | 100 | 50 | 20.0 | 0.35 | 0.58 | 0.14 | 0.33 | 1.0 | 0.60 | 100.0 | 27.0 | 20.0 |
sec | 2001_07 | dssp | 1jek:B | 91.2 | 90 | 100 | 0 | 0 | 100 | 40 | 96.6 | 100 | 100 | 41 | 0.0 | 0.42 | 0.56 | 0.30 | 0.60 | 1.0 | 0.60 | 100.0 | 8.0 | 0.00 |
sec | 2001_07 | dssp | 1jfi:A | 73.3 | 92 | 74 | 0 | 0 | 45 | 69 | 75.3 | 100 | 0 | 35 | 1.6 | 0.15 | 0.12 | 0.18 | 0.43 | 1.0 | 0.40 | 100.0 | 15.0 | 3.0 |
sec | 2001_07 | dssp | 1jfi:B | 84.4 | 91 | 89 | 0 | 0 | 62 | 62 | 90.9 | 100 | 0 | 62 | 0.7 | 0.24 | 0.23 | 0.26 | 0.55 | 1.0 | 0.53 | 100.0 | 1.0 | 1.0 |
sec | 2001_07 | dssp | 1jfy:A | 69.9 | 100 | 73 | 34 | 57 | 58 | 68 | 51.6 | 66 | 34 | 45 | 4.8 | 0.36 | 0.35 | 0.39 | 0.74 | 0.33 | 0.44 | 0.0 | 14.0 | 9.0 |
sec | 2001_07 | dssp | 1jg8:A | 84.3 | 90 | 91 | 69 | 84 | 84 | 75 | 80.6 | 87 | 81 | 72 | 0.8 | 0.51 | 0.51 | 0.52 | 0.82 | 0.72 | 0.68 | 100.0 | 0.00 | 3.0 |
sec | 2001_07 | dssp | THIS_month:psum | 77.1 | 76 | 81 | 44 | 50 | 80 | 70 | 71.5 | 72.5 | 64.7 | 67.4 | 3.1 | 0.36 | 0.38 | 0.36 | 0.63 | 0.66 | 0.57 | 91.6 | 6.6 | 5.3 |
sec | 2001_07 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_07 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |