METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2001_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_07 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_07 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2001_07 | dssp | THIS_month:psum | 77.1 | 76 | 80 | 41 | 49 | 78 | 70 | 69.8 | 74.8 | 60.2 | 62.7 | 1.8 | 0.36 | 0.36 | 0.37 | 0.63 | 0.68 | 0.55 | 95.8 | 5.6 | 4.1 |
sec | 2001_07 | dssp | 1dcj:A | 87.7 | 78 | 100 | 85 | 89 | 94 | 81 | 85.4 | 95 | 85 | 79 | 0.0 | 0.63 | 0.62 | 0.65 | 0.84 | 0.83 | 0.76 | 100.0 | 6.0 | 1.0 |
sec | 2001_07 | dssp | 1e44:B | 67.7 | 9 | 33 | 43 | 81 | 92 | 66 | 42.8 | 10 | 47 | 46 | 1.0 | 0.17 | 0.13 | 0.21 | 0.12 | 0.48 | 0.36 | 100.0 | 8.0 | 14.0 |
sec | 2001_07 | dssp | 1faz:A | 65.6 | 61 | 82 | 0 | 0 | 73 | 53 | 66.2 | 68 | 100 | 61 | 0.8 | 0.10 | 0.11 | 0.09 | 0.37 | 1.0 | 0.34 | 100.0 | 16.0 | 2.0 |
sec | 2001_07 | dssp | 1g7o:A | 77.7 | 85 | 81 | 68 | 78 | 67 | 70 | 74.1 | 76 | 75 | 70 | 0.9 | 0.32 | 0.32 | 0.33 | 0.59 | 0.71 | 0.52 | 100.0 | 2.0 | 0.00 |
sec | 2001_07 | dssp | 1gc5:A | 77.5 | 87 | 84 | 59 | 75 | 74 | 69 | 79.1 | 93 | 67 | 67 | 2.7 | 0.38 | 0.38 | 0.39 | 0.72 | 0.60 | 0.56 | 100.0 | 1.0 | 4.0 |
sec | 2001_07 | dssp | 1h5p:A | 58.9 | 48 | 56 | 27 | 40 | 81 | 65 | 49.3 | 43 | 27 | 60 | 12.6 | 0.14 | 0.14 | 0.16 | 0.33 | 0.17 | 0.45 | 100.0 | 4.0 | 7.0 |
sec | 2001_07 | dssp | 1hq0:A | 64.7 | 55 | 61 | 53 | 70 | 78 | 62 | 56.8 | 61 | 61 | 51 | 5.7 | 0.18 | 0.18 | 0.19 | 0.49 | 0.42 | 0.42 | 100.0 | 1.0 | 8.0 |
sec | 2001_07 | dssp | 1hr6:A | 80.3 | 89 | 86 | 57 | 78 | 79 | 73 | 71.5 | 82 | 59 | 64 | 0.4 | 0.45 | 0.45 | 0.47 | 0.79 | 0.61 | 0.60 | 100.0 | 1.0 | 4.0 |
sec | 2001_07 | dssp | 1hr7:A | 80.5 | 89 | 86 | 57 | 78 | 79 | 74 | 72.0 | 82 | 60 | 65 | 0.4 | 0.46 | 0.45 | 0.47 | 0.79 | 0.62 | 0.60 | 100.0 | 1.0 | 4.0 |
sec | 2001_07 | dssp | 1hr8:A | 82.9 | 89 | 88 | 59 | 93 | 86 | 75 | 76.9 | 90 | 65 | 69 | 0.0 | 0.52 | 0.51 | 0.54 | 0.81 | 0.70 | 0.66 | 100.0 | 0.00 | 6.0 |
sec | 2001_07 | dssp | 1hr9:A | 82.9 | 89 | 87 | 60 | 93 | 86 | 76 | 77.4 | 90 | 66 | 70 | 0.0 | 0.52 | 0.50 | 0.54 | 0.80 | 0.71 | 0.65 | 100.0 | 1.0 | 6.0 |
sec | 2001_07 | dssp | 1hzg:A | 65.4 | 62 | 59 | 54 | 73 | 75 | 62 | 60.8 | 69 | 69 | 50 | 4.7 | 0.19 | 0.20 | 0.20 | 0.52 | 0.46 | 0.41 | 100.0 | 1.0 | 9.0 |
sec | 2001_07 | dssp | 1i3j:A | 72.9 | 51 | 100 | 63 | 33 | 87 | 79 | 67.5 | 61 | 53 | 74 | 7.2 | 0.32 | 0.33 | 0.33 | 0.64 | 0.36 | 0.59 | 100.0 | 15.0 | 10.0 |
sec | 2001_07 | dssp | 1ijx:A | 74.4 | 74 | 86 | 0 | 0 | 88 | 70 | 52.4 | 70 | 0 | 48 | 0.8 | 0.32 | 0.28 | 0.36 | 0.68 | -0.04 | 0.52 | 100.0 | 5.0 | 8.0 |
sec | 2001_07 | dssp | 1ijy:A | 79.5 | 75 | 88 | 0 | 0 | 92 | 74 | 56.1 | 70 | 0 | 46 | 0.0 | 0.36 | 0.31 | 0.41 | 0.69 | 1.0 | 0.60 | 100.0 | 6.0 | 5.0 |
sec | 2001_07 | dssp | 1j8f:A | 77.8 | 78 | 81 | 100 | 83 | 70 | 70 | 81.9 | 82 | 100 | 75 | 0.0 | 0.44 | 0.45 | 0.44 | 0.60 | 0.90 | 0.52 | 100.0 | 2.0 | 2.0 |
sec | 2001_07 | dssp | 1jc5:A | 79.3 | 74 | 86 | 78 | 82 | 81 | 75 | 77.4 | 74 | 85 | 72 | 0.0 | 0.44 | 0.43 | 0.45 | 0.76 | 0.69 | 0.58 | 100.0 | 2.0 | 1.0 |
sec | 2001_07 | dssp | 1jei:A | 75.5 | 90 | 64 | 0 | 0 | 66 | 91 | 72.0 | 90 | 100 | 63 | 0.0 | 0.26 | 0.28 | 0.24 | 0.57 | 1.0 | 0.55 | 100.0 | 15.0 | 1.0 |
sec | 2001_07 | dssp | 1jek:A | 97.5 | 97 | 100 | 0 | 0 | 100 | 66 | 98.8 | 100 | 100 | 75 | 0.0 | 0.66 | 0.76 | 0.57 | 0.80 | 1.0 | 0.80 | 100.0 | 2.0 | 0.00 |
sec | 2001_07 | dssp | 1jek:B | 91.2 | 90 | 100 | 0 | 0 | 100 | 40 | 67.4 | 67 | 100 | 75 | 0.0 | 0.42 | 0.56 | 0.30 | 0.60 | 1.0 | 0.60 | 100.0 | 8.0 | 0.00 |
sec | 2001_07 | dssp | 1jfi:A | 78.3 | 100 | 74 | 0 | 0 | 45 | 100 | 81.7 | 100 | 0 | 55 | 3.3 | 0.35 | 0.25 | 0.46 | 0.55 | 1.0 | 0.59 | 100.0 | 21.0 | 3.0 |
sec | 2001_07 | dssp | 1jfi:B | 87.4 | 92 | 92 | 0 | 0 | 74 | 68 | 92.7 | 100 | 0 | 70 | 0.7 | 0.33 | 0.32 | 0.36 | 0.64 | 1.0 | 0.64 | 100.0 | 0.00 | 1.0 |
sec | 2001_07 | dssp | 1jfy:A | 71.3 | 100 | 76 | 53 | 62 | 50 | 67 | 47.0 | 51 | 48 | 41 | 1.3 | 0.41 | 0.41 | 0.43 | 0.77 | 0.46 | 0.39 | 0.0 | 12.0 | 3.0 |
sec | 2001_07 | dssp | 1jg8:A | 75.8 | 73 | 86 | 74 | 81 | 78 | 63 | 69.4 | 72 | 78 | 60 | 1.1 | 0.38 | 0.38 | 0.38 | 0.65 | 0.73 | 0.52 | 100.0 | 6.0 | 1.0 |
sec | 2001_07 | dssp | THIS_month:psum | 77.1 | 76 | 80 | 41 | 49 | 78 | 70 | 69.8 | 74.8 | 60.2 | 62.7 | 1.8 | 0.36 | 0.36 | 0.37 | 0.63 | 0.68 | 0.55 | 95.8 | 5.6 | 4.1 |
sec | 2001_07 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_07 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |