METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2001_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_06 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_06 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_06 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2001_06 | dssp | THIS_month:psum | 67.5 | 65 | 73 | 33 | 48 | 74 | 62 | 63.4 | 63.0 | 71.1 | 63.4 | 7.1 | 0.27 | 0.28 | 0.26 | 0.50 | 0.65 | 0.46 | 73.3 | 11.0 | 10.6 |
sec | 2001_06 | dssp | 1e32:A | 69.2 | 67 | 86 | 32 | 81 | 89 | 59 | 57.0 | 75 | 40 | 50 | 0.6 | 0.31 | 0.28 | 0.35 | 0.66 | 0.44 | 0.46 | 0.0 | 7.0 | 13.0 |
sec | 2001_06 | dssp | 1f3y:A | 75.8 | 88 | 81 | 50 | 74 | 84 | 72 | 76.9 | 83 | 57 | 85 | 4.2 | 0.39 | 0.39 | 0.41 | 0.77 | 0.49 | 0.60 | 100.0 | 2.0 | 9.0 |
sec | 2001_06 | dssp | 1f7l:A | 72.0 | 87 | 78 | 58 | 82 | 66 | 54 | 67.3 | 80 | 63 | 54 | 5.0 | 0.34 | 0.35 | 0.35 | 0.70 | 0.57 | 0.44 | 100.0 | 4.0 | 10.0 |
sec | 2001_06 | dssp | 1f7t:A | 62.2 | 81 | 60 | 44 | 73 | 54 | 58 | 60.4 | 73 | 51 | 51 | 14.2 | 0.18 | 0.17 | 0.19 | 0.43 | 0.44 | 0.40 | 0.0 | 14.0 | 12.0 |
sec | 2001_06 | dssp | 1h9e:A | 75.0 | 52 | 60 | 0 | 0 | 84 | 94 | 71.5 | 52 | 100 | 77 | 10.7 | 0.40 | 0.48 | 0.33 | 0.38 | 1.0 | 0.69 | 100.0 | 3.0 | 10.0 |
sec | 2001_06 | dssp | 1h9f:A | 80.7 | 100 | 62 | 0 | 0 | 73 | 100 | 72.1 | 63 | 100 | 74 | 0.0 | 0.44 | 0.52 | 0.37 | 0.70 | 1.0 | 0.65 | 100.0 | 15.0 | 3.0 |
sec | 2001_06 | dssp | 1hf9:A | 85.4 | 82 | 100 | 0 | 0 | 100 | 50 | 97.6 | 100 | 100 | 83 | 0.0 | 0.43 | 0.51 | 0.35 | 0.64 | 1.0 | 0.64 | 100.0 | 14.0 | 0.00 |
sec | 2001_06 | dssp | 1hh0:A | 65.2 | 71 | 80 | 0 | 0 | 45 | 33 | 37.4 | 35 | 100 | 59 | 0.0 | 0.01 | 0.02 | 0.02 | 0.15 | 1.0 | 0.15 | 100.0 | 8.0 | 0.00 |
sec | 2001_06 | dssp | 1hs6:A | 65.6 | 61 | 82 | 56 | 65 | 77 | 54 | 59.7 | 60 | 68 | 52 | 4.7 | 0.22 | 0.22 | 0.22 | 0.54 | 0.50 | 0.41 | 0.0 | 10.0 | 3.0 |
sec | 2001_06 | dssp | 1i74:A | 81.9 | 82 | 90 | 69 | 91 | 87 | 71 | 81.4 | 87 | 80 | 75 | 0.0 | 0.50 | 0.49 | 0.52 | 0.77 | 0.75 | 0.64 | 100.0 | 3.0 | 4.0 |
sec | 2001_06 | dssp | 1ia9:A | 65.6 | 59 | 72 | 43 | 64 | 83 | 63 | 60.8 | 71 | 45 | 64 | 6.5 | 0.19 | 0.19 | 0.21 | 0.52 | 0.39 | 0.47 | 100.0 | 5.0 | 8.0 |
sec | 2001_06 | dssp | 1iaj:A | 64.0 | 70 | 64 | 41 | 54 | 73 | 67 | 65.0 | 82 | 47 | 63 | 9.4 | 0.17 | 0.17 | 0.18 | 0.52 | 0.32 | 0.46 | 100.0 | 2.0 | 6.0 |
sec | 2001_06 | dssp | 1iij:A | 22.9 | 12 | 100 | 0 | 0 | 50 | 41 | 22.0 | 16 | 100 | 37 | 42.8 | 0.06 | 0.07 | 0.05 | 0.19 | 1.0 | 0.20 | 100.0 | 62.0 | 57.0 |
sec | 2001_06 | dssp | 1im3:D | 53.7 | 0 | 0 | 50 | 81 | 65 | 45 | 54.0 | 0 | 53 | 61 | 8.4 | 0.07 | 0.09 | 0.07 | -0.06 | 0.29 | 0.24 | 0.0 | 9.0 | 24.0 |
sec | 2001_06 | dssp | 1j79:A | 74.3 | 67 | 88 | 65 | 66 | 83 | 69 | 67.9 | 69 | 63 | 67 | 1.4 | 0.33 | 0.33 | 0.34 | 0.66 | 0.59 | 0.52 | 100.0 | 8.0 | 0.00 |
sec | 2001_06 | dssp | THIS_month:psum | 67.5 | 65 | 73 | 33 | 48 | 74 | 62 | 63.4 | 63.0 | 71.1 | 63.4 | 7.1 | 0.27 | 0.28 | 0.26 | 0.50 | 0.65 | 0.46 | 73.3 | 11.0 | 10.6 |
sec | 2001_06 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_06 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_06 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |