METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2001_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_05 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_05 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_05 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2001_05 | dssp | THIS_month:psum | 75.6 | 66 | 58 | 43 | 50 | 72 | 75 | 65.6 | 80.3 | 53.3 | 60 | 0.84 | 0.29 | 0.28 | 0.29 | 0.69 | 0.65 | 0.47 | 100 | 3.5 | 6.4 |
sec | 2001_05 | dssp | 1c8b:A | 63.8 | 76 | 56 | 49 | 56 | 61 | 73 | 54.9 | 68 | 52 | 50 | 5.3 | 0.17 | 0.17 | 0.17 | 0.47 | 0.42 | 0.38 | 100.0 | 10.0 | 2.0 |
sec | 2001_05 | dssp | 1ews:A | 78.1 | 0 | 0 | 53 | 87 | 94 | 75 | 75.8 | 100 | 70 | 79 | 0.0 | 0.25 | 0.24 | 0.28 | 1.0 | 0.55 | 0.55 | 100.0 | 0.00 | 15.0 |
sec | 2001_05 | dssp | 1ezv:G | 66.7 | 82 | 65 | 60 | 66 | 54 | 68 | 51.5 | 89 | 60 | 30 | 0.0 | 0.25 | 0.26 | 0.26 | 0.49 | 0.59 | 0.33 | 100.0 | 10.0 | 1.0 |
sec | 2001_05 | dssp | 1fwo:A | 68.6 | 0 | 0 | 50 | 18 | 70 | 91 | 49.7 | 100 | 21 | 52 | 0.0 | 0.02 | 0.03 | 0.01 | 1.0 | 0.14 | 0.14 | 100.0 | 0.00 | 20.0 |
sec | 2001_05 | dssp | 1g4y:B | 90.1 | 96 | 92 | 0 | 0 | 64 | 75 | 71.0 | 73 | 0 | 59 | 0.0 | 0.42 | 0.37 | 0.47 | 0.69 | 1.0 | 0.63 | 100.0 | 3.0 | 1.0 |
sec | 2001_05 | dssp | 1g5v:A | 80.4 | 100 | 75 | 70 | 86 | 88 | 76 | 78.6 | 100 | 77 | 77 | 1.7 | 0.42 | 0.44 | 0.42 | 0.85 | 0.61 | 0.65 | 100.0 | 1.0 | 8.0 |
sec | 2001_05 | dssp | 1i7w:B | 70.6 | 64 | 64 | 0 | 0 | 72 | 84 | 38.6 | 64 | 100 | 35 | 0.0 | 0.19 | 0.23 | 0.16 | 0.50 | 1.0 | 0.34 | 100.0 | 0.00 | 9.0 |
sec | 2001_05 | dssp | 1ib2:A | 82.6 | 94 | 84 | 0 | 0 | 52 | 74 | 73.9 | 82 | 0 | 53 | 0.3 | 0.26 | 0.22 | 0.30 | 0.55 | 1.0 | 0.52 | 100.0 | 9.0 | 1.0 |
sec | 2001_05 | dssp | 1ifq:A | 83.5 | 91 | 89 | 72 | 88 | 82 | 74 | 88.3 | 100 | 84 | 78 | 0.0 | 0.55 | 0.55 | 0.56 | 0.85 | 0.74 | 0.65 | 100.0 | 0.00 | 4.0 |
sec | 2001_05 | dssp | 1ihn:A | 72.6 | 78 | 91 | 60 | 70 | 78 | 66 | 70.1 | 85 | 54 | 72 | 0.0 | 0.38 | 0.38 | 0.40 | 0.80 | 0.50 | 0.45 | 100.0 | 3.0 | 4.0 |
sec | 2001_05 | dssp | 1ija:A | 75.0 | 50 | 30 | 66 | 79 | 82 | 79 | 70.2 | 23 | 69 | 75 | 2.0 | 0.24 | 0.25 | 0.24 | 0.34 | 0.59 | 0.52 | 100.0 | 3.0 | 6.0 |
sec | 2001_05 | dssp | THIS_month:psum | 75.6 | 66 | 58 | 43 | 50 | 72 | 75 | 65.6 | 80.3 | 53.3 | 60 | 0.84 | 0.29 | 0.28 | 0.29 | 0.69 | 0.65 | 0.47 | 100 | 3.5 | 6.4 |
sec | 2001_05 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_05 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_05 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |