| METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
| METHOD url: | SAM-T99sec |
| TYPE : | sec |
| NPROT : | 543 |
| NWEEKS : | 100 |
| NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2001_05 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2001_05 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
| sec | 2001_05 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
| sec | 2001_05 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
| sec | 2001_05 | dssp | THIS_month:psum | 75.2 | 65 | 53 | 43 | 48 | 67 | 75 | 67.5 | 80.3 | 59.7 | 62.3 | 1.2 | 0.25 | 0.25 | 0.25 | 0.68 | 0.47 | 0.43 | 100 | 4.8 | 4.2 |
| sec | 2001_05 | dssp | 1ews:A | 78.1 | 0 | 0 | 53 | 87 | 94 | 75 | 75.8 | 100 | 70 | 79 | 0.0 | 0.25 | 0.24 | 0.28 | 1.0 | 0.55 | 0.55 | 100.0 | 0.00 | 15.0 |
| sec | 2001_05 | dssp | 1ezv:G | 54.8 | 74 | 51 | 50 | 50 | 38 | 62 | 51.2 | 74 | 60 | 28 | 5.3 | 0.13 | 0.14 | 0.14 | 0.24 | 0.43 | 0.20 | 100.0 | 18.0 | 0.00 |
| sec | 2001_05 | dssp | 1fwo:A | 65.7 | 0 | 0 | 25 | 12 | 70 | 88 | 49.5 | 100 | 20 | 52 | 0.0 | 0.01 | 0.02 | 0.01 | 1.0 | 0.01 | -0.02 | 100.0 | 5.0 | 11.0 |
| sec | 2001_05 | dssp | 1g4y:B | 90.8 | 96 | 92 | 0 | 0 | 50 | 71 | 70.1 | 71 | 100 | 60 | 0.0 | 0.28 | 0.25 | 0.32 | 0.54 | 1.0 | 0.54 | 100.0 | 3.0 | 0.00 |
| sec | 2001_05 | dssp | 1g5v:A | 80.4 | 100 | 50 | 77 | 87 | 80 | 80 | 91.4 | 66 | 92 | 92 | 1.7 | 0.40 | 0.42 | 0.38 | 0.68 | 0.68 | 0.64 | 100.0 | 5.0 | 5.0 |
| sec | 2001_05 | dssp | 1ib2:A | 79.8 | 91 | 83 | 0 | 0 | 52 | 74 | 64.4 | 71 | 0 | 48 | 3.1 | 0.21 | 0.21 | 0.22 | 0.48 | -0.01 | 0.52 | 100.0 | 6.0 | 1.0 |
| sec | 2001_05 | dssp | 1ihn:A | 74.3 | 78 | 84 | 68 | 75 | 76 | 69 | 67.1 | 61 | 69 | 69 | 0.0 | 0.39 | 0.39 | 0.39 | 0.75 | 0.59 | 0.48 | 100.0 | 1.0 | 2.0 |
| sec | 2001_05 | dssp | 1ija:A | 77.7 | 87 | 70 | 71 | 73 | 80 | 81 | 71.2 | 100 | 67 | 71 | 0.0 | 0.33 | 0.34 | 0.33 | 0.76 | 0.57 | 0.54 | 100.0 | 1.0 | 0.00 |
| sec | 2001_05 | dssp | THIS_month:psum | 75.2 | 65 | 53 | 43 | 48 | 67 | 75 | 67.5 | 80.3 | 59.7 | 62.3 | 1.2 | 0.25 | 0.25 | 0.25 | 0.68 | 0.47 | 0.43 | 100 | 4.8 | 4.2 |
| sec | 2001_05 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
| sec | 2001_05 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
| sec | 2001_05 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |