METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2001_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_05 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_05 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_05 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2001_05 | dssp | THIS_month:psum | 71.9 | 49 | 48 | 48 | 46 | 70 | 72 | 61.0 | 67.0 | 57 | 55.7 | 2.6 | 0.24 | 0.24 | 0.23 | 0.51 | 0.55 | 0.43 | 100 | 5.6 | 5.0 |
sec | 2001_05 | dssp | 1c8b:A | 65.3 | 83 | 55 | 52 | 68 | 59 | 74 | 53.5 | 72 | 57 | 44 | 3.7 | 0.21 | 0.21 | 0.21 | 0.50 | 0.51 | 0.39 | 100.0 | 14.0 | 4.0 |
sec | 2001_05 | dssp | 1ews:A | 75.0 | 0 | 0 | 61 | 72 | 84 | 76 | 68.6 | 100 | 57 | 75 | 0.0 | 0.17 | 0.17 | 0.18 | 1.0 | 0.47 | 0.47 | 100.0 | 0.00 | 6.0 |
sec | 2001_05 | dssp | 1ezv:G | 46.2 | 17 | 33 | 70 | 30 | 65 | 59 | 29.1 | 25 | 61 | 26 | 16.1 | 0.17 | 0.18 | 0.17 | -0.09 | 0.36 | 0.25 | 100.0 | 19.0 | 13.0 |
sec | 2001_05 | dssp | 1fwo:A | 80.0 | 0 | 0 | 75 | 33 | 80 | 96 | 61.6 | 100 | 55 | 62 | 0.0 | 0.16 | 0.20 | 0.12 | 1.0 | 0.40 | 0.40 | 100.0 | 0.00 | 14.0 |
sec | 2001_05 | dssp | 1g4y:B | 86.4 | 90 | 93 | 0 | 0 | 71 | 58 | 71.4 | 71 | 0 | 77 | 0.0 | 0.31 | 0.31 | 0.32 | 0.61 | 1.0 | 0.56 | 100.0 | 2.0 | 1.0 |
sec | 2001_05 | dssp | 1g5v:A | 66.1 | 0 | 0 | 62 | 73 | 76 | 68 | 63.3 | 0 | 70 | 63 | 7.1 | 0.23 | 0.24 | 0.23 | -0.06 | 0.42 | 0.46 | 100.0 | 1.0 | 7.0 |
sec | 2001_05 | dssp | 1i7w:B | 66.7 | 57 | 44 | 0 | 0 | 70 | 81 | 37.1 | 64 | 100 | 33 | 0.0 | 0.06 | 0.07 | 0.06 | 0.28 | 1.0 | 0.25 | 100.0 | 7.0 | 1.0 |
sec | 2001_05 | dssp | 1ib2:A | 79.8 | 89 | 84 | 0 | 0 | 55 | 71 | 77.1 | 85 | 0 | 57 | 2.7 | 0.20 | 0.20 | 0.21 | 0.49 | -0.01 | 0.52 | 100.0 | 4.0 | 1.0 |
sec | 2001_05 | dssp | 1ifq:A | 78.0 | 93 | 75 | 75 | 92 | 63 | 72 | 78.8 | 100 | 84 | 52 | 0.0 | 0.49 | 0.49 | 0.50 | 0.72 | 0.78 | 0.51 | 100.0 | 9.0 | 4.0 |
sec | 2001_05 | dssp | 1ihn:A | 71.7 | 67 | 86 | 74 | 70 | 72 | 66 | 69.7 | 71 | 73 | 66 | 0.0 | 0.35 | 0.35 | 0.36 | 0.70 | 0.59 | 0.43 | 100.0 | 5.0 | 1.0 |
sec | 2001_05 | dssp | 1ija:A | 75.7 | 50 | 66 | 66 | 74 | 83 | 76 | 61.6 | 50 | 70 | 58 | 0.0 | 0.26 | 0.26 | 0.27 | 0.55 | 0.55 | 0.49 | 100.0 | 1.0 | 4.0 |
sec | 2001_05 | dssp | THIS_month:psum | 71.9 | 49 | 48 | 48 | 46 | 70 | 72 | 61.0 | 67.0 | 57 | 55.7 | 2.6 | 0.24 | 0.24 | 0.23 | 0.51 | 0.55 | 0.43 | 100 | 5.6 | 5.0 |
sec | 2001_05 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_05 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_05 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |