METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2001_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_04 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2001_04 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2001_04 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2001_04 | dssp | THIS_month:psum | 77.6 | 59 | 62 | 53 | 53 | 83 | 78 | 70.3 | 84.6 | 67.7 | 69 | 1.1 | 0.38 | 0.39 | 0.38 | 0.80 | 0.55 | 0.56 | 75 | 3.8 | 8.8 |
sec | 2001_04 | dssp | 1daq:A | 84.5 | 87 | 77 | 0 | 0 | 82 | 92 | 75.6 | 84 | 100 | 72 | 0.0 | 0.40 | 0.45 | 0.37 | 0.72 | 1.0 | 0.67 | 100.0 | 4.0 | 2.0 |
sec | 2001_04 | dssp | 1e4u:A | 92.3 | 100 | 100 | 0 | 0 | 97 | 94 | 69.8 | 100 | 0 | 70 | 0.0 | 0.66 | 0.61 | 0.72 | 1.0 | -0.03 | 0.66 | 100.0 | 0.00 | 2.0 |
sec | 2001_04 | dssp | 1fvz:A | 75.1 | 81 | 84 | 56 | 77 | 82 | 67 | 72.3 | 82 | 67 | 68 | 2.2 | 0.36 | 0.36 | 0.38 | 0.74 | 0.56 | 0.55 | 0.0 | 1.0 | 7.0 |
sec | 2001_04 | dssp | 1g5c:A | 76.3 | 65 | 83 | 86 | 89 | 82 | 67 | 81.0 | 76 | 100 | 77 | 0.0 | 0.43 | 0.43 | 0.44 | 0.59 | 0.85 | 0.53 | 100.0 | 8.0 | 0.00 |
sec | 2001_04 | dssp | 1i50:L | 73.9 | 0 | 0 | 100 | 29 | 70 | 100 | 60.3 | 100 | 68 | 59 | 0.0 | 0.26 | 0.35 | 0.18 | 1.0 | 0.45 | 0.45 | 100.0 | 0.00 | 26.0 |
sec | 2001_04 | dssp | 1i85:A | 84.5 | 0 | 0 | 86 | 78 | 83 | 90 | 79.1 | 100 | 88 | 73 | 0.0 | 0.38 | 0.38 | 0.38 | 1.0 | 0.68 | 0.68 | 100.0 | 0.00 | 4.0 |
sec | 2001_04 | dssp | 1iaz:A | 66.9 | 86 | 61 | 44 | 90 | 88 | 59 | 65.5 | 86 | 60 | 64 | 4.5 | 0.29 | 0.29 | 0.29 | 0.68 | 0.46 | 0.48 | 100.0 | 5.0 | 24.0 |
sec | 2001_04 | dssp | 1io1:A | 67.6 | 57 | 97 | 52 | 67 | 87 | 57 | 58.8 | 49 | 59 | 69 | 2.7 | 0.30 | 0.28 | 0.32 | 0.67 | 0.46 | 0.46 | 0.0 | 13.0 | 6.0 |
sec | 2001_04 | dssp | THIS_month:psum | 77.6 | 59 | 62 | 53 | 53 | 83 | 78 | 70.3 | 84.6 | 67.7 | 69 | 1.1 | 0.38 | 0.39 | 0.38 | 0.80 | 0.55 | 0.56 | 75 | 3.8 | 8.8 |
sec | 2001_04 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2001_04 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2001_04 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |