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EVA sec results for: PSIpred month: 2001_03

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2001_03 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2001_03 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2001_03	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_03	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_03	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2001_03	dssp	THIS_month:psum	74.4	73	73	49	48	72	72	70.3	73.7	63.4	65.8	2.4	0.34	0.34	0.34	0.62	0.56	0.50	88.5	6.2	3.7

sec	2001_03	dssp	1ejj:A	78.9	75	88	79	65	81	78	79.9	80	81	79	2.5	0.40	0.40	0.40	0.72	0.65	0.62	0.0	5.0	3.0
sec	2001_03	dssp	1ekp:A	83.8	90	88	81	77	81	85	84.2	91	85	80	1.0	0.52	0.52	0.52	0.86	0.70	0.69	100.0	0.00	1.0
sec	2001_03	dssp	1eu8:A	84.8	94	90	63	87	82	75	80.9	93	62	74	0.2	0.55	0.54	0.57	0.85	0.69	0.67	100.0	1.0	4.0
sec	2001_03	dssp	1eum:A	95.0	96	99	0	0	90	85	93.4	100	0	75	0.0	0.71	0.74	0.68	0.90	-0.00	0.84	100.0	1.0	0.00
sec	2001_03	dssp	1f75:A	87.7	90	90	83	100	85	78	90.7	90	100	85	1.3	0.59	0.58	0.60	0.77	0.89	0.74	100.0	0.00	2.0
sec	2001_03	dssp	1fi4:A	74.2	69	92	66	68	83	65	71.5	69	72	72	1.7	0.36	0.35	0.36	0.70	0.59	0.53	100.0	9.0	0.00
sec	2001_03	dssp	1fn9:A	57.0	47	67	29	26	73	58	52.4	58	26	53	7.9	0.07	0.07	0.07	0.32	0.17	0.31	100.0	12.0	1.0
sec	2001_03	dssp	1fp1:D	83.6	92	86	60	90	76	78	80.2	81	83	77	0.6	0.45	0.44	0.47	0.74	0.71	0.65	100.0	3.0	3.0
sec	2001_03	dssp	1fpx:A	81.7	83	89	74	97	82	66	81.9	86	89	70	0.0	0.50	0.49	0.51	0.72	0.82	0.60	100.0	3.0	4.0
sec	2001_03	dssp	1fse:A	98.5	100	97	0	0	95	100	100.0	100	100	100	0.0	0.89	0.89	0.90	0.96	1.0	0.96	100.0	1.0	0.00
sec	2001_03	dssp	1fw9:A	61.6	62	50	46	93	77	56	57.7	51	54	66	7.9	0.21	0.20	0.22	0.39	0.54	0.40	100.0	6.0	19.0
sec	2001_03	dssp	1g12:A	66.5	60	87	61	30	77	60	65.0	64	57	66	7.7	0.20	0.22	0.19	0.49	0.36	0.48	100.0	17.0	7.0
sec	2001_03	dssp	1g2h:A	85.2	100	75	0	0	72	100	98.4	100	100	97	0.0	0.52	0.51	0.53	0.74	1.0	0.74	0.0	14.0	0.00
sec	2001_03	dssp	1g5b:A	70.8	59	74	68	65	80	71	70.8	70	67	72	5.0	0.26	0.27	0.27	0.52	0.58	0.52	100.0	6.0	0.00
sec	2001_03	dssp	1g5h:A	65.4	69	83	33	36	68	53	59.8	67	22	57	0.7	0.20	0.21	0.21	0.53	0.28	0.32	100.0	9.0	0.00
sec	2001_03	dssp	1g8e:A	73.5	82	84	100	23	48	68	62.4	63	57	60	6.1	0.21	0.23	0.20	0.48	0.45	0.44	0.0	2.0	10.0
sec	2001_03	dssp	1g9l:A	68.8	86	51	0	0	62	98	39.0	75	100	34	2.7	0.24	0.31	0.19	0.51	1.0	0.52	100.0	17.0	9.0
sec	2001_03	dssp	1gef:A	76.7	58	100	84	80	89	62	81.1	69	97	77	3.3	0.45	0.44	0.46	0.68	0.73	0.60	0.0	15.0	1.0
sec	2001_03	dssp	1ggq:A	87.7	96	93	0	0	79	72	87.7	100	0	69	0.0	0.53	0.47	0.60	0.81	1.0	0.67	100.0	2.0	4.0
sec	2001_03	dssp	1gh5:A	70.1	0	0	71	73	68	73	71.0	100	75	66	1.1	0.15	0.17	0.14	1.0	0.47	0.42	100.0	4.0	1.0
sec	2001_03	dssp	1hg3:A	84.4	84	86	84	89	84	80	82.5	92	90	70	0.8	0.52	0.52	0.53	0.75	0.84	0.69	100.0	1.0	0.00
sec	2001_03	dssp	1hhn:A	82.2	0	0	0	0	97	83	26.6	0	0	31	0.0	0.02	0.01	0.04	1.0	-0.05	-0.06	100.0	3.0	9.0
sec	2001_03	dssp	1hn5:A	65.8	77	73	55	68	54	53	66.6	73	68	56	1.3	0.25	0.25	0.26	0.51	0.55	0.28	100.0	2.0	3.0
sec	2001_03	dssp	1hn5:B	59.0	72	65	51	42	49	58	56.3	59	58	52	1.3	0.16	0.16	0.16	0.43	0.38	0.19	100.0	4.0	2.0
sec	2001_03	dssp	1hn5:C	69.4	64	90	87	42	71	62	76.5	74	81	78	4.4	0.28	0.30	0.26	0.58	0.55	0.45	100.0	15.0	10.0
sec	2001_03	dssp	1hn5:D	66.4	75	66	83	83	49	60	62.8	61	96	54	1.2	0.28	0.28	0.29	0.38	0.81	0.29	100.0	6.0	0.00
sec	2001_03	dssp	1hn5:E	53.5	70	52	64	45	38	58	45.9	50	88	35	2.6	0.12	0.12	0.12	0.28	0.47	0.12	100.0	13.0	4.0
sec	2001_03	dssp	1hn5:F	66.1	68	66	75	82	60	59	60.1	51	85	65	1.7	0.26	0.26	0.27	0.39	0.75	0.33	100.0	0.00	1.0
sec	2001_03	dssp	1hux:A	81.9	82	87	86	76	77	79	85.3	86	96	76	3.4	0.47	0.48	0.47	0.74	0.75	0.67	100.0	2.0	3.0
sec	2001_03	dssp	1hx1:B	89.3	97	89	0	0	58	87	86.5	89	100	75	0.0	0.39	0.34	0.44	0.65	1.0	0.65	100.0	7.0	0.00
sec	2001_03	dssp	1i17:A	58.9	60	69	0	0	64	60	56.2	71	0	48	6.5	0.08	0.09	0.08	0.34	-0.07	0.30	100.0	6.0	3.0
sec	2001_03	dssp	1i1r:B	85.0	92	89	0	0	74	81	83.6	94	0	69	0.0	0.41	0.42	0.42	0.73	-0.01	0.66	100.0	2.0	0.00
sec	2001_03	dssp	1i2j:A	52.8	77	44	50	2	39	87	36.1	49	12	31	4.4	0.07	0.08	0.06	0.24	0.08	0.30	100.0	26.0	9.0
sec	2001_03	dssp	1i7o:A	70.2	66	52	58	80	78	72	62.2	49	61	66	4.2	0.24	0.24	0.24	0.49	0.56	0.49	100.0	4.0	8.0
sec	2001_03	dssp	1i9a:A	70.8	75	77	53	78	82	64	68.1	77	59	69	3.3	0.32	0.32	0.34	0.68	0.51	0.49	100.0	0.00	10.0

sec	2001_03	dssp	THIS_month:psum	74.4	73	73	49	48	72	72	70.3	73.7	63.4	65.8	2.4	0.34	0.34	0.34	0.62	0.56	0.50	88.5	6.2	3.7

sec	2001_03	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2001_03	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2001_03	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2001_03
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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