METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2001_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_03 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_03 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_03 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2001_03 | dssp | THIS_month:psum | 72.6 | 71 | 73 | 51 | 46 | 68 | 71 | 67.5 | 71.6 | 62.4 | 60.9 | 2.8 | 0.30 | 0.29 | 0.30 | 0.60 | 0.61 | 0.47 | 74.2 | 7 | 4.9 |
sec | 2001_03 | dssp | 1ejj:A | 77.0 | 77 | 83 | 67 | 73 | 80 | 73 | 71.6 | 79 | 74 | 64 | 0.9 | 0.37 | 0.37 | 0.38 | 0.69 | 0.64 | 0.56 | 100.0 | 2.0 | 1.0 |
sec | 2001_03 | dssp | 1ekp:A | 79.7 | 81 | 83 | 73 | 79 | 83 | 78 | 78.4 | 85 | 76 | 76 | 1.6 | 0.42 | 0.42 | 0.42 | 0.77 | 0.66 | 0.62 | 100.0 | 0.00 | 2.0 |
sec | 2001_03 | dssp | 1eu8:A | 76.4 | 75 | 94 | 51 | 88 | 90 | 60 | 71.4 | 81 | 61 | 62 | 0.2 | 0.42 | 0.41 | 0.44 | 0.73 | 0.62 | 0.57 | 100.0 | 9.0 | 7.0 |
sec | 2001_03 | dssp | 1eum:A | 87.0 | 92 | 94 | 0 | 0 | 68 | 81 | 75.6 | 81 | 0 | 60 | 3.7 | 0.40 | 0.44 | 0.36 | 0.68 | -0.01 | 0.69 | 0.0 | 1.0 | 4.0 |
sec | 2001_03 | dssp | 1f75:A | 84.9 | 85 | 87 | 83 | 100 | 85 | 75 | 88.2 | 89 | 100 | 79 | 2.7 | 0.56 | 0.56 | 0.56 | 0.69 | 0.89 | 0.71 | 100.0 | 1.0 | 2.0 |
sec | 2001_03 | dssp | 1fi4:A | 75.4 | 70 | 91 | 71 | 73 | 83 | 66 | 71.2 | 63 | 78 | 76 | 1.2 | 0.38 | 0.38 | 0.39 | 0.69 | 0.65 | 0.54 | 100.0 | 9.0 | 0.00 |
sec | 2001_03 | dssp | 1fn9:A | 60.8 | 40 | 96 | 47 | 37 | 84 | 56 | 56.2 | 57 | 43 | 58 | 3.0 | 0.20 | 0.19 | 0.21 | 0.50 | 0.33 | 0.33 | 100.0 | 25.0 | 3.0 |
sec | 2001_03 | dssp | 1fp1:D | 78.0 | 93 | 82 | 26 | 57 | 67 | 73 | 74.1 | 83 | 33 | 70 | 1.8 | 0.34 | 0.32 | 0.37 | 0.69 | 0.35 | 0.55 | 0.0 | 7.0 | 5.0 |
sec | 2001_03 | dssp | 1fpx:A | 72.8 | 78 | 83 | 56 | 67 | 71 | 60 | 67.5 | 68 | 68 | 65 | 4.3 | 0.27 | 0.28 | 0.28 | 0.60 | 0.54 | 0.49 | 100.0 | 2.0 | 2.0 |
sec | 2001_03 | dssp | 1fse:A | 92.5 | 100 | 91 | 0 | 0 | 79 | 100 | 90.4 | 100 | 100 | 76 | 0.0 | 0.67 | 0.69 | 0.67 | 0.87 | 1.0 | 0.84 | 100.0 | 5.0 | 1.0 |
sec | 2001_03 | dssp | 1fw9:A | 62.2 | 65 | 60 | 52 | 89 | 70 | 51 | 57.1 | 50 | 61 | 56 | 1.8 | 0.26 | 0.26 | 0.27 | 0.50 | 0.56 | 0.29 | 100.0 | 1.0 | 15.0 |
sec | 2001_03 | dssp | 1g12:A | 70.1 | 66 | 91 | 69 | 33 | 76 | 63 | 70.5 | 74 | 44 | 70 | 5.9 | 0.25 | 0.27 | 0.24 | 0.58 | 0.41 | 0.50 | 100.0 | 15.0 | 8.0 |
sec | 2001_03 | dssp | 1g2h:A | 78.7 | 100 | 70 | 0 | 0 | 60 | 100 | 66.7 | 97 | 100 | 50 | 0.0 | 0.41 | 0.42 | 0.41 | 0.66 | 1.0 | 0.64 | 0.0 | 19.0 | 1.0 |
sec | 2001_03 | dssp | 1g5b:A | 68.0 | 52 | 76 | 77 | 61 | 75 | 67 | 68.2 | 59 | 80 | 69 | 3.6 | 0.24 | 0.24 | 0.25 | 0.49 | 0.60 | 0.43 | 100.0 | 10.0 | 5.0 |
sec | 2001_03 | dssp | 1g5h:A | 49.6 | 45 | 72 | 41 | 19 | 58 | 46 | 42.3 | 46 | 30 | 39 | 9.0 | 0.06 | 0.07 | 0.06 | 0.27 | 0.17 | 0.16 | 100.0 | 20.0 | 10.0 |
sec | 2001_03 | dssp | 1g8e:A | 86.7 | 97 | 89 | 100 | 37 | 59 | 100 | 76.1 | 78 | 66 | 70 | 2.0 | 0.51 | 0.52 | 0.52 | 0.75 | 0.59 | 0.71 | 0.0 | 6.0 | 5.0 |
sec | 2001_03 | dssp | 1g9l:A | 73.6 | 91 | 50 | 0 | 0 | 67 | 96 | 69.3 | 76 | 100 | 67 | 0.0 | 0.24 | 0.27 | 0.21 | 0.52 | 1.0 | 0.51 | 0.0 | 21.0 | 0.00 |
sec | 2001_03 | dssp | 1gef:A | 73.3 | 55 | 100 | 87 | 69 | 78 | 63 | 80.6 | 69 | 97 | 75 | 5.8 | 0.38 | 0.38 | 0.40 | 0.66 | 0.65 | 0.55 | 0.0 | 15.0 | 8.0 |
sec | 2001_03 | dssp | 1ggq:A | 85.2 | 98 | 86 | 0 | 0 | 64 | 80 | 83.3 | 97 | 0 | 59 | 2.4 | 0.39 | 0.32 | 0.48 | 0.69 | 1.0 | 0.64 | 100.0 | 9.0 | 4.0 |
sec | 2001_03 | dssp | 1gh5:A | 72.4 | 0 | 0 | 73 | 70 | 71 | 74 | 71.8 | 100 | 76 | 67 | 0.0 | 0.15 | 0.15 | 0.15 | 1.0 | 0.44 | 0.44 | 100.0 | 0.00 | 2.0 |
sec | 2001_03 | dssp | 1hg3:A | 71.4 | 76 | 82 | 82 | 55 | 61 | 70 | 77.9 | 90 | 73 | 66 | 2.6 | 0.33 | 0.34 | 0.33 | 0.65 | 0.58 | 0.45 | 0.0 | 3.0 | 8.0 |
sec | 2001_03 | dssp | 1hhn:A | 84.2 | 0 | 0 | 0 | 0 | 100 | 84 | 14.8 | 0 | 0 | 17 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 3.0 | 11.0 |
sec | 2001_03 | dssp | 1hn5:A | 62.2 | 79 | 69 | 50 | 51 | 44 | 53 | 63.0 | 79 | 56 | 44 | 4.5 | 0.16 | 0.16 | 0.16 | 0.47 | 0.41 | 0.24 | 100.0 | 6.0 | 0.00 |
sec | 2001_03 | dssp | 1hn5:B | 55.4 | 68 | 63 | 62 | 38 | 41 | 54 | 54.0 | 55 | 66 | 49 | 1.8 | 0.15 | 0.16 | 0.15 | 0.39 | 0.40 | 0.12 | 100.0 | 3.0 | 7.0 |
sec | 2001_03 | dssp | 1hn5:C | 73.4 | 70 | 87 | 87 | 58 | 74 | 63 | 77.2 | 78 | 91 | 72 | 2.0 | 0.32 | 0.33 | 0.31 | 0.59 | 0.67 | 0.49 | 100.0 | 10.0 | 4.0 |
sec | 2001_03 | dssp | 1hn5:D | 61.2 | 72 | 62 | 73 | 75 | 43 | 53 | 59.9 | 63 | 85 | 47 | 2.0 | 0.20 | 0.20 | 0.21 | 0.30 | 0.71 | 0.20 | 100.0 | 7.0 | 0.00 |
sec | 2001_03 | dssp | 1hn5:E | 52.6 | 65 | 50 | 80 | 48 | 36 | 58 | 43.1 | 46 | 88 | 33 | 3.0 | 0.14 | 0.15 | 0.14 | 0.23 | 0.56 | 0.11 | 100.0 | 11.0 | 7.0 |
sec | 2001_03 | dssp | 1hn5:F | 64.8 | 69 | 64 | 68 | 84 | 58 | 59 | 61.9 | 57 | 84 | 60 | 2.6 | 0.22 | 0.22 | 0.23 | 0.36 | 0.72 | 0.31 | 100.0 | 3.0 | 2.0 |
sec | 2001_03 | dssp | 1hux:A | 77.2 | 81 | 85 | 75 | 71 | 73 | 71 | 82.0 | 83 | 93 | 73 | 3.8 | 0.38 | 0.39 | 0.39 | 0.71 | 0.64 | 0.58 | 100.0 | 2.0 | 1.0 |
sec | 2001_03 | dssp | 1hx1:B | 82.1 | 93 | 85 | 0 | 0 | 41 | 62 | 69.1 | 73 | 100 | 47 | 0.0 | 0.15 | 0.13 | 0.17 | 0.40 | 1.0 | 0.40 | 100.0 | 7.0 | 0.00 |
sec | 2001_03 | dssp | 1i17:A | 75.7 | 83 | 77 | 33 | 40 | 72 | 77 | 73.9 | 84 | 30 | 68 | 2.8 | 0.27 | 0.27 | 0.28 | 0.59 | 0.33 | 0.56 | 0.0 | 3.0 | 0.00 |
sec | 2001_03 | dssp | 1i1r:B | 84.4 | 95 | 83 | 0 | 0 | 67 | 86 | 89.0 | 93 | 0 | 84 | 0.5 | 0.36 | 0.34 | 0.40 | 0.67 | 1.0 | 0.66 | 100.0 | 8.0 | 1.0 |
sec | 2001_03 | dssp | 1i2j:A | 46.5 | 47 | 47 | 100 | 1 | 45 | 92 | 35.1 | 37 | 13 | 34 | 16.0 | 0.11 | 0.15 | 0.09 | 0.19 | 0.08 | 0.40 | 0.0 | 0.00 | 33.0 |
sec | 2001_03 | dssp | 1i7o:A | 76.2 | 66 | 74 | 66 | 77 | 85 | 76 | 70.6 | 55 | 73 | 73 | 2.9 | 0.32 | 0.31 | 0.33 | 0.64 | 0.59 | 0.58 | 100.0 | 1.0 | 4.0 |
sec | 2001_03 | dssp | 1i9a:A | 72.5 | 82 | 77 | 53 | 78 | 82 | 67 | 62.1 | 84 | 48 | 59 | 3.9 | 0.34 | 0.33 | 0.35 | 0.72 | 0.51 | 0.53 | 100.0 | 1.0 | 10.0 |
sec | 2001_03 | dssp | THIS_month:psum | 72.6 | 71 | 73 | 51 | 46 | 68 | 71 | 67.5 | 71.6 | 62.4 | 60.9 | 2.8 | 0.30 | 0.29 | 0.30 | 0.60 | 0.61 | 0.47 | 74.2 | 7 | 4.9 |
sec | 2001_03 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_03 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_03 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |