METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2001_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_02 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_02 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_02 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2001_02 | dssp | THIS_month:psum | 72.6 | 70 | 75 | 44 | 51 | 73 | 69 | 69.0 | 74.5 | 58.3 | 65.0 | 3.5 | 0.29 | 0.29 | 0.29 | 0.60 | 0.55 | 0.49 | 74.0 | 6.1 | 4.4 |
sec | 2001_02 | dssp | 1cwy:A | 78.6 | 83 | 88 | 47 | 60 | 83 | 73 | 73.5 | 78 | 54 | 73 | 2.2 | 0.37 | 0.36 | 0.38 | 0.74 | 0.47 | 0.61 | 100.0 | 2.0 | 2.0 |
sec | 2001_02 | dssp | 1dc1:A | 71.8 | 84 | 83 | 47 | 85 | 59 | 47 | 59.1 | 62 | 63 | 41 | 0.4 | 0.32 | 0.31 | 0.34 | 0.61 | 0.58 | 0.33 | 100.0 | 0.00 | 7.0 |
sec | 2001_02 | dssp | 1eg7:A | 74.5 | 79 | 77 | 60 | 73 | 76 | 72 | 68.5 | 75 | 63 | 65 | 1.4 | 0.33 | 0.33 | 0.34 | 0.66 | 0.60 | 0.51 | 100.0 | 0.00 | 3.0 |
sec | 2001_02 | dssp | 1egu:A | 71.7 | 72 | 88 | 45 | 77 | 89 | 61 | 60.7 | 78 | 44 | 58 | 2.6 | 0.33 | 0.32 | 0.35 | 0.71 | 0.49 | 0.53 | 0.0 | 6.0 | 11.0 |
sec | 2001_02 | dssp | 1eha:A | 75.9 | 58 | 86 | 61 | 62 | 87 | 76 | 62.6 | 61 | 49 | 66 | 0.8 | 0.32 | 0.31 | 0.34 | 0.64 | 0.54 | 0.51 | 100.0 | 8.0 | 0.00 |
sec | 2001_02 | dssp | 1ehk:A | 68.1 | 73 | 86 | 0 | 0 | 55 | 55 | 61.9 | 65 | 0 | 54 | 9.4 | 0.13 | 0.15 | 0.11 | 0.38 | -0.04 | 0.40 | 0.0 | 11.0 | 10.0 |
sec | 2001_02 | dssp | 1ehk:C | 84.8 | 81 | 100 | 0 | 0 | 100 | 66 | 98.3 | 100 | 100 | 90 | 6.0 | 0.50 | 0.63 | 0.38 | 0.66 | 1.0 | 0.76 | 100.0 | 15.0 | 6.0 |
sec | 2001_02 | dssp | 1evy:A | 75.4 | 84 | 83 | 65 | 70 | 67 | 66 | 70.1 | 76 | 75 | 61 | 0.3 | 0.36 | 0.36 | 0.37 | 0.68 | 0.62 | 0.48 | 100.0 | 0.00 | 1.0 |
sec | 2001_02 | dssp | 1eyr:A | 77.3 | 79 | 79 | 70 | 80 | 79 | 74 | 77.3 | 77 | 74 | 78 | 1.7 | 0.39 | 0.39 | 0.40 | 0.69 | 0.68 | 0.57 | 0.0 | 0.00 | 3.0 |
sec | 2001_02 | dssp | 1f32:A | 59.0 | 48 | 81 | 71 | 55 | 59 | 48 | 51.7 | 55 | 60 | 39 | 8.5 | 0.19 | 0.19 | 0.20 | 0.48 | 0.44 | 0.29 | 0.0 | 15.0 | 8.0 |
sec | 2001_02 | dssp | 1fgu:A | 77.2 | 51 | 91 | 80 | 83 | 83 | 70 | 74.5 | 56 | 89 | 68 | 0.4 | 0.39 | 0.38 | 0.42 | 0.64 | 0.70 | 0.56 | 100.0 | 7.0 | 1.0 |
sec | 2001_02 | dssp | 1fiu:A | 67.5 | 74 | 72 | 51 | 47 | 65 | 68 | 65.5 | 72 | 49 | 63 | 5.5 | 0.18 | 0.19 | 0.18 | 0.50 | 0.41 | 0.44 | 100.0 | 0.00 | 1.0 |
sec | 2001_02 | dssp | 1fkm:A | 81.4 | 83 | 90 | 0 | 0 | 76 | 61 | 84.8 | 91 | 0 | 68 | 0.0 | 0.26 | 0.27 | 0.26 | 0.57 | 1.0 | 0.56 | 100.0 | 5.0 | 0.00 |
sec | 2001_02 | dssp | 1fqj:C | 71.1 | 60 | 75 | 0 | 0 | 78 | 81 | 77.9 | 68 | 100 | 83 | 5.2 | 0.18 | 0.22 | 0.16 | 0.49 | 1.0 | 0.51 | 100.0 | 7.0 | 10.0 |
sec | 2001_02 | dssp | 1fx2:A | 68.9 | 59 | 81 | 79 | 75 | 72 | 58 | 74.8 | 70 | 80 | 75 | 0.0 | 0.34 | 0.34 | 0.35 | 0.55 | 0.70 | 0.38 | 0.0 | 10.0 | 1.0 |
sec | 2001_02 | dssp | 1g47:A | 51.4 | 70 | 25 | 0 | 0 | 63 | 78 | 38.6 | 63 | 0 | 42 | 12.8 | 0.11 | 0.12 | 0.12 | 0.26 | -0.15 | 0.28 | 100.0 | 24.0 | 11.0 |
sec | 2001_02 | dssp | 1g8q:A | 81.1 | 83 | 87 | 0 | 0 | 77 | 77 | 87.8 | 84 | 100 | 93 | 3.3 | 0.32 | 0.35 | 0.29 | 0.59 | 1.0 | 0.65 | 100.0 | 3.0 | 3.0 |
sec | 2001_02 | dssp | 1g8y:A | 83.9 | 91 | 83 | 74 | 82 | 80 | 84 | 91.0 | 98 | 81 | 87 | 1.6 | 0.49 | 0.49 | 0.50 | 0.78 | 0.73 | 0.70 | 100.0 | 3.0 | 1.0 |
sec | 2001_02 | dssp | 1g9r:A | 64.1 | 54 | 70 | 64 | 64 | 73 | 59 | 63.4 | 53 | 74 | 68 | 6.4 | 0.18 | 0.19 | 0.19 | 0.40 | 0.55 | 0.41 | 100.0 | 9.0 | 0.00 |
sec | 2001_02 | dssp | 1gcu:A | 63.0 | 83 | 63 | 39 | 59 | 56 | 63 | 58.9 | 68 | 45 | 58 | 13.0 | 0.16 | 0.16 | 0.18 | 0.49 | 0.34 | 0.42 | 0.0 | 12.0 | 9.0 |
sec | 2001_02 | dssp | 1h8r:A | 69.2 | 68 | 67 | 75 | 58 | 67 | 76 | 64.6 | 68 | 71 | 60 | 3.2 | 0.25 | 0.26 | 0.25 | 0.53 | 0.57 | 0.45 | 100.0 | 0.00 | 5.0 |
sec | 2001_02 | dssp | 1how:A | 69.0 | 68 | 73 | 55 | 75 | 75 | 63 | 67.0 | 78 | 62 | 59 | 2.9 | 0.26 | 0.26 | 0.27 | 0.53 | 0.57 | 0.44 | 100.0 | 2.0 | 5.0 |
sec | 2001_02 | dssp | 1hqc:A | 76.4 | 94 | 72 | 55 | 76 | 64 | 83 | 77.7 | 92 | 55 | 70 | 1.2 | 0.37 | 0.36 | 0.39 | 0.67 | 0.61 | 0.55 | 100.0 | 13.0 | 3.0 |
sec | 2001_02 | dssp | 1hqm:E | 69.4 | 72 | 65 | 0 | 0 | 69 | 87 | 61.1 | 68 | 0 | 58 | 6.1 | 0.23 | 0.26 | 0.20 | 0.49 | -0.04 | 0.53 | 100.0 | 4.0 | 8.0 |
sec | 2001_02 | dssp | 1hqo:A | 80.6 | 78 | 94 | 63 | 80 | 88 | 65 | 77.6 | 80 | 73 | 74 | 0.0 | 0.43 | 0.43 | 0.43 | 0.71 | 0.68 | 0.61 | 100.0 | 9.0 | 1.0 |
sec | 2001_02 | dssp | 1i1i:P | 81.2 | 87 | 86 | 53 | 88 | 76 | 72 | 73.8 | 78 | 64 | 66 | 0.1 | 0.39 | 0.38 | 0.40 | 0.68 | 0.67 | 0.59 | 0.0 | 0.00 | 2.0 |
sec | 2001_02 | dssp | 1i25:A | 70.3 | 0 | 0 | 60 | 46 | 74 | 83 | 42.0 | 100 | 50 | 39 | 0.0 | 0.07 | 0.08 | 0.07 | 1.0 | 0.31 | 0.31 | 100.0 | 0.00 | 8.0 |
sec | 2001_02 | dssp | THIS_month:psum | 72.6 | 70 | 75 | 44 | 51 | 73 | 69 | 69.0 | 74.5 | 58.3 | 65.0 | 3.5 | 0.29 | 0.29 | 0.29 | 0.60 | 0.55 | 0.49 | 74.0 | 6.1 | 4.4 |
sec | 2001_02 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2001_02 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2001_02 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |