METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2001_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_01 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2001_01 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2001_01 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2001_01 | dssp | THIS_month:psum | 77.2 | 73 | 72 | 43 | 53 | 76 | 72 | 76.5 | 85.2 | 66.5 | 71.5 | 2.6 | 0.37 | 0.36 | 0.38 | 0.73 | 0.62 | 0.52 | 78.5 | 6.7 | 6.9 |
sec | 2001_01 | dssp | 1dqe:A | 83.9 | 98 | 85 | 0 | 0 | 62 | 91 | 70.7 | 90 | 0 | 50 | 0.0 | 0.48 | 0.48 | 0.49 | 0.77 | -0.02 | 0.65 | 100.0 | 9.0 | 2.0 |
sec | 2001_01 | dssp | 1emx:A | 76.7 | 0 | 0 | 50 | 14 | 78 | 95 | 73.5 | 100 | 7 | 78 | 0.0 | 0.03 | 0.05 | 0.02 | 1.0 | 0.16 | 0.16 | 100.0 | 0.00 | 16.0 |
sec | 2001_01 | dssp | 1ep1:B | 71.3 | 80 | 74 | 67 | 76 | 70 | 66 | 75.8 | 78 | 76 | 74 | 0.0 | 0.34 | 0.35 | 0.35 | 0.71 | 0.56 | 0.42 | 100.0 | 1.0 | 4.0 |
sec | 2001_01 | dssp | 1es8:A | 65.8 | 73 | 81 | 45 | 82 | 81 | 50 | 58.4 | 67 | 41 | 69 | 2.5 | 0.30 | 0.30 | 0.32 | 0.68 | 0.48 | 0.40 | 100.0 | 3.0 | 16.0 |
sec | 2001_01 | dssp | 1f9a:A | 84.8 | 90 | 89 | 79 | 79 | 80 | 81 | 93.3 | 97 | 96 | 87 | 0.0 | 0.53 | 0.53 | 0.53 | 0.81 | 0.75 | 0.68 | 100.0 | 0.00 | 0.00 |
sec | 2001_01 | dssp | 1fe6:A | 42.3 | 38 | 100 | 0 | 0 | 100 | 15 | 56.0 | 57 | 100 | 36 | 25.0 | 0.15 | 0.26 | 0.05 | 0.18 | 1.0 | 0.31 | 100.0 | 57.0 | 25.0 |
sec | 2001_01 | dssp | 1fm0:D | 82.7 | 100 | 85 | 72 | 80 | 77 | 82 | 68.2 | 71 | 74 | 62 | 0.0 | 0.57 | 0.57 | 0.57 | 0.89 | 0.68 | 0.64 | 0.0 | 4.0 | 2.0 |
sec | 2001_01 | dssp | 1fm0:E | 80.3 | 96 | 89 | 64 | 84 | 79 | 65 | 83.0 | 100 | 69 | 78 | 2.8 | 0.51 | 0.51 | 0.51 | 0.88 | 0.62 | 0.60 | 100.0 | 2.0 | 8.0 |
sec | 2001_01 | dssp | 1fy2:A | 83.2 | 98 | 84 | 67 | 81 | 81 | 83 | 83.8 | 100 | 71 | 80 | 0.4 | 0.54 | 0.54 | 0.55 | 0.87 | 0.67 | 0.67 | 100.0 | 4.0 | 4.0 |
sec | 2001_01 | dssp | 1fzp:D | 74.5 | 79 | 83 | 0 | 0 | 62 | 55 | 63.7 | 62 | 100 | 68 | 0.0 | 0.12 | 0.13 | 0.13 | 0.40 | 1.0 | 0.40 | 100.0 | 3.0 | 0.00 |
sec | 2001_01 | dssp | 1fzr:A | 72.9 | 90 | 76 | 48 | 73 | 75 | 69 | 80.4 | 98 | 57 | 81 | 3.1 | 0.34 | 0.34 | 0.36 | 0.74 | 0.49 | 0.51 | 0.0 | 5.0 | 9.0 |
sec | 2001_01 | dssp | 1g1i:A | 93.0 | 100 | 92 | 0 | 0 | 40 | 100 | 95.3 | 100 | 100 | 60 | 0.0 | 0.44 | 0.30 | 0.58 | 0.60 | 1.0 | 0.60 | 100.0 | 6.0 | 0.00 |
sec | 2001_01 | dssp | 1g6o:A | 79.6 | 82 | 80 | 65 | 90 | 84 | 75 | 76.0 | 74 | 74 | 79 | 3.4 | 0.42 | 0.41 | 0.43 | 0.69 | 0.71 | 0.65 | 0.0 | 1.0 | 5.0 |
sec | 2001_01 | dssp | 1hx2:A | 90.0 | 0 | 0 | 58 | 87 | 97 | 90 | 93.3 | 100 | 66 | 100 | 0.0 | 0.39 | 0.35 | 0.45 | 1.0 | 0.66 | 0.66 | 100.0 | 0.00 | 6.0 |
sec | 2001_01 | dssp | THIS_month:psum | 77.2 | 73 | 72 | 43 | 53 | 76 | 72 | 76.5 | 85.2 | 66.5 | 71.5 | 2.6 | 0.37 | 0.36 | 0.38 | 0.73 | 0.62 | 0.52 | 78.5 | 6.7 | 6.9 |
sec | 2001_01 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2001_01 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2001_01 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |