METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2000_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_12 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2000_12 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2000_12 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2000_12 | dssp | THIS_month:psum | 76.4 | 61 | 72 | 51 | 64 | 85 | 69 | 70.9 | 67.9 | 68.1 | 70.3 | 1.1 | 0.37 | 0.35 | 0.38 | 0.73 | 0.67 | 0.54 | 73.9 | 7.5 | 6.3 |
sec | 2000_12 | dssp | 1d7y:A | 75.6 | 74 | 89 | 64 | 82 | 84 | 66 | 69.9 | 77 | 69 | 65 | 0.2 | 0.40 | 0.39 | 0.42 | 0.75 | 0.63 | 0.53 | 100.0 | 4.0 | 6.0 |
sec | 2000_12 | dssp | 1dkc:A | 73.0 | 0 | 0 | 23 | 100 | 100 | 70 | 49.8 | 100 | 30 | 60 | 0.0 | 0.23 | 0.14 | 0.33 | 1.0 | 0.40 | 0.40 | 100.0 | 0.00 | 27.0 |
sec | 2000_12 | dssp | 1dl5:A | 56.8 | 45 | 64 | 32 | 80 | 91 | 49 | 48.0 | 54 | 39 | 49 | 8.5 | 0.15 | 0.14 | 0.17 | 0.34 | 0.39 | 0.42 | 0.0 | 10.0 | 18.0 |
sec | 2000_12 | dssp | 1dl9:A | 72.8 | 76 | 50 | 33 | 50 | 75 | 86 | 71.3 | 64 | 28 | 77 | 1.2 | 0.19 | 0.20 | 0.19 | 0.48 | 0.37 | 0.43 | 100.0 | 11.0 | 2.0 |
sec | 2000_12 | dssp | 1dmg:A | 66.7 | 62 | 100 | 27 | 100 | 100 | 51 | 57.1 | 75 | 36 | 53 | 0.0 | 0.41 | 0.35 | 0.48 | 0.71 | 0.46 | 0.49 | 100.0 | 14.0 | 19.0 |
sec | 2000_12 | dssp | 1ekt:A | 83.0 | 100 | 100 | 86 | 65 | 77 | 92 | 75.0 | 100 | 93 | 64 | 0.0 | 0.58 | 0.60 | 0.57 | 1.0 | 0.63 | 0.67 | 100.0 | 0.00 | 9.0 |
sec | 2000_12 | dssp | 1eo1:A | 91.1 | 88 | 95 | 88 | 85 | 92 | 91 | 94.9 | 100 | 92 | 94 | 0.0 | 0.66 | 0.67 | 0.67 | 0.90 | 0.83 | 0.81 | 100.0 | 1.0 | 0.00 |
sec | 2000_12 | dssp | 1ewn:A | 75.4 | 40 | 90 | 67 | 95 | 97 | 67 | 63.7 | 43 | 77 | 65 | 1.0 | 0.42 | 0.37 | 0.48 | 0.54 | 0.73 | 0.59 | 100.0 | 13.0 | 8.0 |
sec | 2000_12 | dssp | 1f2d:A | 78.0 | 75 | 83 | 73 | 86 | 82 | 71 | 79.3 | 79 | 86 | 76 | 0.8 | 0.39 | 0.39 | 0.41 | 0.65 | 0.76 | 0.57 | 100.0 | 4.0 | 2.0 |
sec | 2000_12 | dssp | 1f5q:B | 78.9 | 77 | 92 | 0 | 0 | 82 | 61 | 82.4 | 85 | 100 | 74 | 1.6 | 0.26 | 0.29 | 0.23 | 0.55 | 1.0 | 0.57 | 100.0 | 11.0 | 1.0 |
sec | 2000_12 | dssp | 1f62:A | 84.3 | 0 | 0 | 75 | 50 | 93 | 88 | 73.5 | 0 | 62 | 79 | 0.0 | 0.24 | 0.19 | 0.29 | 1.0 | 0.57 | 0.34 | 100.0 | 7.0 | 3.0 |
sec | 2000_12 | dssp | 1f6d:A | 80.3 | 75 | 92 | 78 | 81 | 86 | 69 | 82.6 | 85 | 83 | 78 | 0.7 | 0.45 | 0.45 | 0.45 | 0.71 | 0.76 | 0.62 | 100.0 | 8.0 | 0.00 |
sec | 2000_12 | dssp | 1f7c:A | 77.5 | 73 | 95 | 0 | 0 | 86 | 64 | 77.3 | 82 | 100 | 68 | 2.7 | 0.30 | 0.35 | 0.26 | 0.62 | 1.0 | 0.60 | 100.0 | 15.0 | 4.0 |
sec | 2000_12 | dssp | 1fjn:A | 59.0 | 0 | 0 | 50 | 66 | 90 | 57 | 30.0 | 0 | 50 | 36 | 0.0 | 0.19 | 0.12 | 0.27 | 1.0 | 0.48 | 0.17 | 100.0 | 25.0 | 5.0 |
sec | 2000_12 | dssp | 1fou:A | 77.6 | 82 | 79 | 77 | 56 | 74 | 83 | 82.1 | 74 | 83 | 88 | 1.7 | 0.36 | 0.37 | 0.35 | 0.69 | 0.61 | 0.59 | 100.0 | 1.0 | 4.0 |
sec | 2000_12 | dssp | 1fpo:A | 90.6 | 90 | 96 | 0 | 0 | 90 | 76 | 93.8 | 96 | 100 | 87 | 0.0 | 0.51 | 0.53 | 0.49 | 0.77 | 1.0 | 0.77 | 100.0 | 4.0 | 0.00 |
sec | 2000_12 | dssp | 1fu1:A | 70.2 | 75 | 88 | 60 | 86 | 71 | 45 | 52.3 | 42 | 72 | 71 | 0.0 | 0.38 | 0.39 | 0.39 | 0.69 | 0.63 | 0.36 | 0.0 | 6.0 | 8.0 |
sec | 2000_12 | dssp | 1fwk:A | 78.7 | 82 | 92 | 59 | 85 | 89 | 65 | 79.1 | 90 | 65 | 79 | 1.3 | 0.47 | 0.46 | 0.48 | 0.81 | 0.63 | 0.61 | 0.0 | 4.0 | 8.0 |
sec | 2000_12 | dssp | 1g6g:A | 73.2 | 0 | 0 | 87 | 70 | 79 | 76 | 71.7 | 0 | 91 | 73 | 3.9 | 0.27 | 0.23 | 0.32 | 1.0 | 0.62 | 0.54 | 0.0 | 11.0 | 9.0 |
sec | 2000_12 | dssp | 1g99:A | 79.1 | 76 | 89 | 70 | 82 | 86 | 70 | 80.5 | 81 | 76 | 81 | 1.7 | 0.41 | 0.41 | 0.42 | 0.71 | 0.71 | 0.62 | 100.0 | 6.0 | 2.0 |
sec | 2000_12 | dssp | 1ga6:A | 69.1 | 49 | 96 | 61 | 80 | 90 | 58 | 63.1 | 64 | 67 | 58 | 0.8 | 0.33 | 0.31 | 0.37 | 0.60 | 0.61 | 0.47 | 0.0 | 15.0 | 6.0 |
sec | 2000_12 | dssp | 1gak:A | 86.1 | 92 | 89 | 0 | 0 | 72 | 76 | 74.0 | 78 | 0 | 66 | 0.7 | 0.35 | 0.32 | 0.38 | 0.66 | 1.0 | 0.65 | 100.0 | 2.0 | 1.0 |
sec | 2000_12 | dssp | 1gg4:A | 81.1 | 81 | 87 | 70 | 82 | 86 | 77 | 80.4 | 94 | 68 | 76 | 0.5 | 0.46 | 0.45 | 0.47 | 0.77 | 0.70 | 0.63 | 0.0 | 2.0 | 3.0 |
sec | 2000_12 | dssp | THIS_month:psum | 76.4 | 61 | 72 | 51 | 64 | 85 | 69 | 70.9 | 67.9 | 68.1 | 70.3 | 1.1 | 0.37 | 0.35 | 0.38 | 0.73 | 0.67 | 0.54 | 73.9 | 7.5 | 6.3 |
sec | 2000_12 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2000_12 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2000_12 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |