METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2000_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_11 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2000_11 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2000_11 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2000_11 | dssp | THIS_month:psum | 73 | 64 | 71 | 41 | 54 | 76 | 69 | 66.6 | 68.6 | 66.4 | 63.4 | 2.6 | 0.31 | 0.30 | 0.32 | 0.59 | 0.66 | 0.49 | 76.9 | 10.1 | 5.2 |
sec | 2000_11 | dssp | 1by6:A | 47.2 | 66 | 21 | 0 | 0 | 43 | 86 | 21.8 | 28 | 100 | 21 | 0.0 | 0.02 | 0.03 | 0.02 | 0.12 | 1.0 | 0.07 | 100.0 | 36.0 | 5.0 |
sec | 2000_11 | dssp | 1c0p:A | 73.8 | 62 | 93 | 55 | 87 | 93 | 63 | 64.3 | 75 | 69 | 55 | 0.8 | 0.38 | 0.36 | 0.42 | 0.69 | 0.61 | 0.55 | 100.0 | 9.0 | 10.0 |
sec | 2000_11 | dssp | 1dfc:A | 68.0 | 0 | 0 | 65 | 77 | 76 | 71 | 69.8 | 0 | 68 | 76 | 4.0 | 0.17 | 0.18 | 0.17 | -0.06 | 0.51 | 0.43 | 100.0 | 3.0 | 7.0 |
sec | 2000_11 | dssp | 1e5d:A | 83.5 | 82 | 97 | 76 | 86 | 89 | 71 | 86.7 | 93 | 84 | 80 | 0.0 | 0.56 | 0.56 | 0.57 | 0.84 | 0.75 | 0.67 | 100.0 | 6.0 | 2.0 |
sec | 2000_11 | dssp | 1e79:I | 55.3 | 100 | 42 | 33 | 100 | 36 | 84 | 45.6 | 75 | 33 | 36 | 0.0 | 0.30 | 0.27 | 0.33 | 0.42 | 0.56 | 0.26 | 100.0 | 40.0 | 4.0 |
sec | 2000_11 | dssp | 1e96:B | 73.9 | 91 | 74 | 0 | 0 | 43 | 71 | 62.9 | 78 | 0 | 43 | 3.2 | 0.14 | 0.12 | 0.18 | 0.37 | 1.0 | 0.42 | 100.0 | 15.0 | 3.0 |
sec | 2000_11 | dssp | 1ehx:A | 78.7 | 41 | 83 | 76 | 76 | 89 | 79 | 81.1 | 50 | 80 | 89 | 4.2 | 0.36 | 0.34 | 0.38 | 0.55 | 0.63 | 0.66 | 100.0 | 6.0 | 0.00 |
sec | 2000_11 | dssp | 1ev0:A | 70.7 | 66 | 100 | 55 | 83 | 89 | 53 | 72.7 | 71 | 77 | 69 | 0.0 | 0.42 | 0.40 | 0.44 | 0.74 | 0.57 | 0.48 | 100.0 | 12.0 | 10.0 |
sec | 2000_11 | dssp | 1f5m:A | 73.3 | 72 | 96 | 62 | 58 | 81 | 67 | 74.6 | 75 | 78 | 72 | 5.1 | 0.36 | 0.37 | 0.37 | 0.75 | 0.47 | 0.56 | 0.0 | 9.0 | 1.0 |
sec | 2000_11 | dssp | 1faf:A | 94.9 | 91 | 100 | 0 | 0 | 100 | 88 | 92.4 | 93 | 100 | 90 | 0.0 | 0.75 | 0.77 | 0.74 | 0.90 | 1.0 | 0.90 | 100.0 | 5.0 | 0.00 |
sec | 2000_11 | dssp | 1fd3:A | 61.0 | 0 | 0 | 30 | 50 | 95 | 63 | 49.2 | 0 | 30 | 73 | 7.3 | 0.14 | 0.10 | 0.20 | 1.0 | 0.19 | 0.40 | 100.0 | 14.0 | 12.0 |
sec | 2000_11 | dssp | 1fp3:A | 75.6 | 83 | 86 | 28 | 47 | 76 | 63 | 70.4 | 83 | 15 | 63 | 2.4 | 0.28 | 0.28 | 0.30 | 0.65 | 0.31 | 0.53 | 100.0 | 2.0 | 3.0 |
sec | 2000_11 | dssp | 1fs1:A | 73.2 | 76 | 80 | 0 | 0 | 66 | 62 | 61.3 | 64 | 100 | 56 | 0.0 | 0.14 | 0.14 | 0.14 | 0.43 | 1.0 | 0.43 | 100.0 | 2.0 | 0.00 |
sec | 2000_11 | dssp | 1fsi:A | 73.0 | 85 | 68 | 56 | 91 | 78 | 67 | 65.7 | 100 | 43 | 70 | 7.2 | 0.34 | 0.34 | 0.35 | 0.63 | 0.62 | 0.57 | 100.0 | 8.0 | 13.0 |
sec | 2000_11 | dssp | 1fuk:A | 84.1 | 79 | 95 | 82 | 76 | 89 | 80 | 88.7 | 84 | 91 | 91 | 2.5 | 0.52 | 0.52 | 0.52 | 0.80 | 0.73 | 0.73 | 0.0 | 6.0 | 1.0 |
sec | 2000_11 | dssp | 1fvi:A | 53.5 | 36 | 47 | 22 | 62 | 78 | 54 | 38.3 | 40 | 26 | 43 | 3.4 | 0.07 | 0.06 | 0.09 | 0.24 | 0.27 | 0.16 | 100.0 | 5.0 | 16.0 |
sec | 2000_11 | dssp | 1fx8:A | 56.7 | 44 | 98 | 0 | 0 | 92 | 48 | 60.5 | 60 | 100 | 59 | 16.1 | 0.21 | 0.27 | 0.15 | 0.39 | 1.0 | 0.51 | 0.0 | 40.0 | 17.0 |
sec | 2000_11 | dssp | 1fy7:A | 73.6 | 77 | 80 | 57 | 80 | 80 | 66 | 70.0 | 76 | 72 | 62 | 2.5 | 0.33 | 0.32 | 0.34 | 0.67 | 0.59 | 0.52 | 0.0 | 1.0 | 6.0 |
sec | 2000_11 | dssp | 1fyx:A | 69.1 | 69 | 77 | 82 | 70 | 63 | 60 | 73.0 | 68 | 89 | 71 | 0.6 | 0.30 | 0.31 | 0.30 | 0.52 | 0.71 | 0.37 | 100.0 | 4.0 | 2.0 |
sec | 2000_11 | dssp | 1g1p:A | 81.2 | 0 | 0 | 42 | 60 | 92 | 85 | 38.9 | 100 | 20 | 44 | 0.0 | 0.13 | 0.13 | 0.15 | 1.0 | 0.39 | 0.39 | 100.0 | 0.00 | 6.0 |
sec | 2000_11 | dssp | 1g25:A | 83.1 | 61 | 88 | 37 | 75 | 97 | 82 | 73.4 | 69 | 37 | 81 | 1.5 | 0.41 | 0.35 | 0.48 | 0.69 | 0.48 | 0.64 | 100.0 | 6.0 | 6.0 |
sec | 2000_11 | dssp | 1g2i:A | 75.9 | 66 | 97 | 66 | 90 | 93 | 60 | 70.0 | 78 | 69 | 60 | 0.0 | 0.46 | 0.45 | 0.48 | 0.72 | 0.71 | 0.57 | 0.0 | 12.0 | 6.0 |
sec | 2000_11 | dssp | 1g5t:A | 83.4 | 89 | 81 | 78 | 81 | 79 | 86 | 92.0 | 96 | 85 | 90 | 3.1 | 0.50 | 0.50 | 0.50 | 0.74 | 0.75 | 0.72 | 100.0 | 3.0 | 0.00 |
sec | 2000_11 | dssp | 1g61:A | 67.6 | 61 | 93 | 69 | 55 | 71 | 64 | 68.1 | 78 | 61 | 63 | 6.2 | 0.28 | 0.28 | 0.28 | 0.67 | 0.44 | 0.45 | 0.0 | 11.0 | 7.0 |
sec | 2000_11 | dssp | 1g7d:A | 87.7 | 97 | 85 | 0 | 0 | 70 | 92 | 85.9 | 86 | 100 | 84 | 0.0 | 0.45 | 0.43 | 0.48 | 0.72 | 1.0 | 0.72 | 100.0 | 8.0 | 0.00 |
sec | 2000_11 | dssp | 1qoj:A | 80.0 | 89 | 87 | 0 | 0 | 28 | 33 | 56.2 | 64 | 100 | 9 | 0.0 | 0.03 | 0.04 | 0.04 | 0.19 | 1.0 | 0.19 | 100.0 | 2.0 | 0.00 |
sec | 2000_11 | dssp | THIS_month:psum | 73 | 64 | 71 | 41 | 54 | 76 | 69 | 66.6 | 68.6 | 66.4 | 63.4 | 2.6 | 0.31 | 0.30 | 0.32 | 0.59 | 0.66 | 0.49 | 76.9 | 10.1 | 5.2 |
sec | 2000_11 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2000_11 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2000_11 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |