METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2000_10 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_10 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2000_10 | dssp | THIS_month:psum | 73.7 | 60 | 70 | 41 | 56 | 83 | 67 | 69.8 | 67.8 | 67.5 | 67.9 | 3.4 | 0.32 | 0.32 | 0.32 | 0.62 | 0.61 | 0.52 | 79.3 | 8.1 | 7.5 |
sec | 2000_10 | dssp | 1c4r:A | 74.4 | 44 | 100 | 65 | 86 | 88 | 65 | 74.6 | 66 | 71 | 79 | 0.0 | 0.29 | 0.28 | 0.32 | 0.65 | 0.56 | 0.52 | 100.0 | 2.0 | 12.0 |
sec | 2000_10 | dssp | 1d6m:A | 73.9 | 73 | 93 | 60 | 75 | 81 | 57 | 70.8 | 83 | 61 | 55 | 0.0 | 0.38 | 0.38 | 0.39 | 0.69 | 0.61 | 0.48 | 100.0 | 10.0 | 3.0 |
sec | 2000_10 | dssp | 1d7b:A | 73.7 | 0 | 0 | 59 | 87 | 92 | 67 | 63.1 | 0 | 69 | 62 | 0.0 | 0.24 | 0.21 | 0.29 | 1.0 | 0.56 | 0.50 | 100.0 | 4.0 | 14.0 |
sec | 2000_10 | dssp | 1dl6:A | 86.2 | 0 | 0 | 75 | 50 | 88 | 95 | 59.1 | 100 | 68 | 58 | 0.0 | 0.25 | 0.29 | 0.23 | 1.0 | 0.53 | 0.53 | 100.0 | 0.00 | 6.0 |
sec | 2000_10 | dssp | 1e4f:T | 77.5 | 80 | 96 | 66 | 92 | 89 | 54 | 80.9 | 92 | 76 | 70 | 0.3 | 0.49 | 0.49 | 0.50 | 0.81 | 0.69 | 0.55 | 100.0 | 6.0 | 10.0 |
sec | 2000_10 | dssp | 1eg2:A | 76.3 | 67 | 87 | 58 | 100 | 92 | 65 | 65.0 | 68 | 73 | 57 | 0.3 | 0.43 | 0.41 | 0.47 | 0.67 | 0.72 | 0.58 | 0.0 | 7.0 | 9.0 |
sec | 2000_10 | dssp | 1ei5:A | 66.4 | 65 | 87 | 41 | 85 | 88 | 55 | 56.8 | 73 | 52 | 51 | 0.3 | 0.31 | 0.28 | 0.34 | 0.69 | 0.47 | 0.41 | 100.0 | 6.0 | 17.0 |
sec | 2000_10 | dssp | 1ewq:A | 78.0 | 82 | 88 | 55 | 82 | 84 | 66 | 73.3 | 80 | 63 | 68 | 1.7 | 0.40 | 0.39 | 0.41 | 0.73 | 0.61 | 0.59 | 100.0 | 3.0 | 6.0 |
sec | 2000_10 | dssp | 1ezf:A | 74.7 | 75 | 90 | 0 | 0 | 71 | 53 | 74.0 | 78 | 100 | 62 | 1.2 | 0.17 | 0.20 | 0.15 | 0.48 | 1.0 | 0.45 | 100.0 | 11.0 | 2.0 |
sec | 2000_10 | dssp | 1f3u:A | 67.8 | 46 | 36 | 52 | 96 | 93 | 63 | 72.1 | 46 | 71 | 80 | 8.4 | 0.28 | 0.28 | 0.29 | 0.31 | 0.57 | 0.57 | 100.0 | 3.0 | 22.0 |
sec | 2000_10 | dssp | 1f3u:B | 53.2 | 18 | 13 | 48 | 92 | 73 | 55 | 49.0 | 5 | 64 | 53 | 11.2 | 0.19 | 0.19 | 0.20 | -0.06 | 0.54 | 0.31 | 100.0 | 6.0 | 19.0 |
sec | 2000_10 | dssp | 1f6u:A | 56.4 | 0 | 0 | 16 | 20 | 88 | 60 | 12.0 | 0 | 3 | 18 | 0.0 | 0.06 | 0.04 | 0.10 | 1.0 | 0.09 | -0.11 | 100.0 | 27.0 | 1.0 |
sec | 2000_10 | dssp | 1f81:A | 74.7 | 64 | 100 | 0 | 0 | 100 | 53 | 80.5 | 83 | 100 | 72 | 0.0 | 0.35 | 0.38 | 0.33 | 0.58 | 1.0 | 0.58 | 0.0 | 25.0 | 0.00 |
sec | 2000_10 | dssp | 1fft:C | 66.5 | 62 | 88 | 0 | 0 | 74 | 75 | 69.7 | 64 | 100 | 79 | 15.6 | 0.24 | 0.30 | 0.18 | 0.45 | 1.0 | 0.61 | 0.0 | 18.0 | 19.0 |
sec | 2000_10 | dssp | 1fho:A | 63.9 | 86 | 37 | 36 | 59 | 73 | 80 | 60.0 | 74 | 39 | 65 | 10.9 | 0.20 | 0.21 | 0.19 | 0.47 | 0.29 | 0.49 | 100.0 | 16.0 | 11.0 |
sec | 2000_10 | dssp | 1fio:A | 87.6 | 90 | 95 | 0 | 0 | 65 | 46 | 91.1 | 94 | 100 | 61 | 0.0 | 0.21 | 0.24 | 0.19 | 0.48 | 1.0 | 0.48 | 100.0 | 4.0 | 0.00 |
sec | 2000_10 | dssp | 1fiq:B | 71.8 | 76 | 68 | 50 | 70 | 80 | 75 | 76.2 | 76 | 61 | 84 | 8.1 | 0.26 | 0.26 | 0.28 | 0.57 | 0.49 | 0.59 | 0.0 | 3.0 | 6.0 |
sec | 2000_10 | dssp | 1fl4:A | 76.0 | 76 | 70 | 63 | 67 | 79 | 82 | 78.5 | 78 | 60 | 85 | 3.6 | 0.31 | 0.32 | 0.31 | 0.62 | 0.58 | 0.59 | 100.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1fnn:A | 81.5 | 85 | 86 | 62 | 88 | 81 | 73 | 82.2 | 86 | 73 | 78 | 1.4 | 0.41 | 0.40 | 0.42 | 0.69 | 0.71 | 0.64 | 100.0 | 0.00 | 3.0 |
sec | 2000_10 | dssp | 1fq0:A | 84.5 | 89 | 94 | 69 | 78 | 85 | 77 | 89.1 | 93 | 79 | 88 | 0.0 | 0.54 | 0.54 | 0.55 | 0.85 | 0.68 | 0.68 | 100.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1fqy:A | 70.4 | 58 | 93 | 0 | 0 | 89 | 77 | 82.9 | 76 | 100 | 92 | 15.9 | 0.35 | 0.43 | 0.28 | 0.51 | 1.0 | 0.72 | 0.0 | 23.0 | 17.0 |
sec | 2000_10 | dssp | 1ft9:A | 74.8 | 83 | 75 | 64 | 90 | 75 | 66 | 77.7 | 92 | 77 | 64 | 1.9 | 0.38 | 0.38 | 0.39 | 0.67 | 0.69 | 0.51 | 0.0 | 3.0 | 8.0 |
sec | 2000_10 | dssp | 1fu9:A | 83.3 | 90 | 100 | 0 | 0 | 95 | 80 | 72.4 | 100 | 0 | 72 | 0.0 | 0.61 | 0.53 | 0.70 | 0.93 | -0.05 | 0.65 | 100.0 | 2.0 | 8.0 |
sec | 2000_10 | dssp | 1fwq:A | 61.7 | 0 | 0 | 29 | 52 | 80 | 76 | 50.7 | 0 | 32 | 62 | 9.5 | 0.09 | 0.10 | 0.09 | -0.06 | 0.20 | 0.35 | 100.0 | 11.0 | 13.0 |
sec | 2000_10 | dssp | 1fxj:A | 78.9 | 68 | 92 | 75 | 87 | 88 | 68 | 77.4 | 83 | 67 | 81 | 0.0 | 0.47 | 0.46 | 0.49 | 0.73 | 0.74 | 0.59 | 100.0 | 7.0 | 4.0 |
sec | 2000_10 | dssp | 1gd2:E | 92.3 | 94 | 96 | 0 | 0 | 75 | 66 | 82.6 | 85 | 100 | 65 | 0.0 | 0.39 | 0.41 | 0.38 | 0.66 | 1.0 | 0.66 | 100.0 | 1.0 | 0.00 |
sec | 2000_10 | dssp | 1qmu:A | 78.4 | 69 | 97 | 66 | 80 | 90 | 71 | 77.6 | 69 | 79 | 82 | 0.5 | 0.44 | 0.42 | 0.47 | 0.76 | 0.65 | 0.60 | 100.0 | 8.0 | 4.0 |
sec | 2000_10 | dssp | 1qmy:A | 66.7 | 58 | 81 | 47 | 54 | 82 | 65 | 64.9 | 64 | 59 | 67 | 6.4 | 0.22 | 0.21 | 0.23 | 0.59 | 0.35 | 0.48 | 100.0 | 8.0 | 3.0 |
sec | 2000_10 | dssp | 1qnr:A | 68.0 | 50 | 95 | 59 | 55 | 87 | 62 | 60.5 | 59 | 63 | 60 | 3.7 | 0.27 | 0.26 | 0.28 | 0.59 | 0.47 | 0.47 | 100.0 | 18.0 | 1.0 |
sec | 2000_10 | dssp | THIS_month:psum | 73.7 | 60 | 70 | 41 | 56 | 83 | 67 | 69.8 | 67.8 | 67.5 | 67.9 | 3.4 | 0.32 | 0.32 | 0.32 | 0.62 | 0.61 | 0.52 | 79.3 | 8.1 | 7.5 |
sec | 2000_10 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |