| METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
| METHOD url: | SAM-T99sec |
| TYPE : | sec |
| NPROT : | 543 |
| NWEEKS : | 100 |
| NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2000_09 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2000_09 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
| sec | 2000_09 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
| sec | 2000_09 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
| sec | 2000_09 | dssp | THIS_month:psum | 68.2 | 55 | 40 | 72 | 69 | 64 | 72 | 57.4 | 47.3 | 75.3 | 50.3 | 2.4 | 0.25 | 0.25 | 0.25 | 0.35 | 0.56 | 0.44 | 33.3 | 8.3 | 8.3 |
| sec | 2000_09 | dssp | 1d2o:A | 69.0 | 0 | 0 | 63 | 87 | 85 | 54 | 74.4 | 0 | 79 | 72 | 0.5 | 0.18 | 0.18 | 0.19 | -0.01 | 0.48 | 0.44 | 0.0 | 2.0 | 17.0 |
| sec | 2000_09 | dssp | 1fjf:C | 65.5 | 81 | 60 | 69 | 52 | 52 | 83 | 59.2 | 62 | 62 | 56 | 6.7 | 0.21 | 0.22 | 0.22 | 0.51 | 0.50 | 0.47 | 0.0 | 12.0 | 5.0 |
| sec | 2000_09 | dssp | 1fjf:I | 70.1 | 85 | 61 | 85 | 69 | 56 | 80 | 38.8 | 80 | 85 | 23 | 0.0 | 0.35 | 0.36 | 0.34 | 0.57 | 0.71 | 0.42 | 100.0 | 11.0 | 3.0 |
| sec | 2000_09 | dssp | THIS_month:psum | 68.2 | 55 | 40 | 72 | 69 | 64 | 72 | 57.4 | 47.3 | 75.3 | 50.3 | 2.4 | 0.25 | 0.25 | 0.25 | 0.35 | 0.56 | 0.44 | 33.3 | 8.3 | 8.3 |
| sec | 2000_09 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
| sec | 2000_09 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
| sec | 2000_09 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |