Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom Explain scores

EVA sec results for: JPred month: 2000_09

METHOD about:	../../../doc/explain_methods.html#PX_about_jpred
METHOD url:	JPred
TYPE :	sec
NPROT :	1218
NWEEKS :	106
NOTE 1 :	here ALL results obtained for JPred in month 2000_09 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2000_09 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2000_09	dssp	ALL_proteins:psum	73.8	71	85	59	74	84	67	69.2	65.7	66.3	68.3	2.5	0.34	0.33	0.35	0.67	0.58	0.54	7980.3	8.3	6.8
sec	2000_09	dssp	ALL_proteins:sig	9.6	31	35	30	36	11	12	15.0	29.3	26.4	14.8	4.0	0.13	0.14	0.14	0.23	0.25	0.16	7903.8	8.2	7.2
sec	2000_09	dssp	ALL_proteins:errsig	0.27	0.91	1	0.86	1	0.32	0.35	0.43	0.84	0.75	0.42	0.11	0.00	0.00	0.00	0.00	0.00	0.00	226.4	0.23	0.20
sec	2000_09	dssp	THIS_month:psum	74.2	60	63	42	57	80	68	64.4	64.6	65.8	67.5	2.2	0.30	0.29	0.31	0.71	0.58	0.49	63.6	6.8	6.4

sec	2000_09	dssp	1d1h:A	60.0	0	0	0	0	87	65	22.1	0	0	32	0.0	0.07	0.04	0.12	1.0	-0.16	-0.20	100.0	8.0	14.0
sec	2000_09	dssp	1d1n:A	67.3	0	0	68	66	66	83	77.2	100	75	78	4.0	0.15	0.18	0.12	1.0	0.46	0.44	100.0	11.0	1.0
sec	2000_09	dssp	1d2o:A	65.8	0	0	60	82	80	52	65.1	0	67	66	1.0	0.11	0.10	0.12	1.0	0.39	0.38	0.0	3.0	16.0
sec	2000_09	dssp	1deb:A	68.5	66	96	0	0	83	23	26.8	24	100	91	0.0	0.11	0.15	0.08	0.32	1.0	0.32	100.0	27.0	0.00
sec	2000_09	dssp	1dl0:A	78.4	0	0	27	100	100	76	43.5	100	36	46	0.0	0.27	0.18	0.38	1.0	0.45	0.45	100.0	0.00	21.0
sec	2000_09	dssp	1dlw:A	87.1	83	96	0	0	94	74	81.8	85	100	74	0.0	0.47	0.49	0.46	0.74	1.0	0.74	100.0	9.0	0.00
sec	2000_09	dssp	1dqc:A	78.1	0	0	38	100	100	75	48.2	0	47	51	0.0	0.32	0.20	0.45	1.0	0.55	0.50	100.0	4.0	17.0
sec	2000_09	dssp	1ekr:A	71.3	82	76	43	70	85	67	71.2	86	63	63	9.7	0.33	0.32	0.34	0.67	0.41	0.61	0.0	2.0	11.0
sec	2000_09	dssp	1eo6:A	81.9	79	91	69	85	90	75	85.6	87	84	84	0.8	0.48	0.47	0.50	0.78	0.71	0.66	0.0	4.0	4.0
sec	2000_09	dssp	1esm:A	74.9	75	86	50	72	84	66	70.2	65	63	80	2.2	0.32	0.32	0.34	0.67	0.54	0.55	100.0	5.0	4.0
sec	2000_09	dssp	1euj:A	69.5	29	83	61	78	85	64	62.9	41	65	65	0.0	0.24	0.21	0.27	0.46	0.52	0.41	100.0	6.0	9.0
sec	2000_09	dssp	1eyq:A	77.4	89	87	55	90	84	61	75.3	92	57	75	1.8	0.45	0.44	0.46	0.81	0.62	0.57	0.0	0.00	11.0
sec	2000_09	dssp	1ezj:A	78.1	78	96	0	0	77	56	65.6	61	100	93	6.1	0.25	0.32	0.19	0.53	1.0	0.56	0.0	14.0	7.0
sec	2000_09	dssp	1ezw:A	79.3	74	94	68	75	88	68	70.7	81	69	58	0.8	0.43	0.43	0.44	0.73	0.67	0.61	100.0	9.0	1.0
sec	2000_09	dssp	1f3v:A	67.1	87	65	22	100	69	64	65.0	75	33	73	11.3	0.23	0.20	0.27	0.50	0.42	0.50	0.0	15.0	17.0
sec	2000_09	dssp	1f5x:A	78.8	86	83	0	0	63	67	75.6	79	100	67	0.0	0.19	0.19	0.20	0.49	1.0	0.49	100.0	1.0	0.00
sec	2000_09	dssp	1fjf:B	82.9	83	85	87	80	81	80	84.0	84	90	81	0.4	0.47	0.47	0.47	0.71	0.82	0.66	100.0	1.0	0.00
sec	2000_09	dssp	1fjf:C	67.5	77	71	66	51	60	73	65.9	62	66	68	2.9	0.24	0.25	0.24	0.60	0.48	0.40	0.0	2.0	5.0
sec	2000_09	dssp	1fjf:I	72.4	82	68	66	70	68	76	52.7	76	71	40	0.0	0.33	0.34	0.33	0.62	0.62	0.45	100.0	6.0	0.00
sec	2000_09	dssp	1fjf:J	65.3	100	39	56	63	61	86	67.9	78	63	67	5.1	0.25	0.27	0.24	0.54	0.47	0.45	0.0	20.0	3.0
sec	2000_09	dssp	1fjf:K	88.2	86	92	90	85	87	87	86.4	90	100	78	0.0	0.62	0.62	0.62	0.86	0.83	0.76	100.0	1.0	1.0
sec	2000_09	dssp	1fjf:N	73.3	72	80	0	0	82	77	54.0	57	0	57	3.3	0.25	0.26	0.26	0.63	-0.07	0.52	100.0	3.0	0.00

sec	2000_09	dssp	THIS_month:psum	74.2	60	63	42	57	80	68	64.4	64.6	65.8	67.5	2.2	0.30	0.29	0.31	0.71	0.58	0.49	63.6	6.8	6.4

sec	2000_09	dssp	ALL_proteins:psum	73.8	71	85	59	74	84	67	69.2	65.7	66.3	68.3	2.5	0.34	0.33	0.35	0.67	0.58	0.54	7980.3	8.3	6.8
sec	2000_09	dssp	ALL_proteins:sig	9.6	31	35	30	36	11	12	15.0	29.3	26.4	14.8	4.0	0.13	0.14	0.14	0.23	0.25	0.16	7903.8	8.2	7.2
sec	2000_09	dssp	ALL_proteins:errsig	0.27	0.91	1	0.86	1	0.32	0.35	0.43	0.84	0.75	0.42	0.11	0.00	0.00	0.00	0.00	0.00	0.00	226.4	0.23	0.20

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2000_09
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Explain scores - Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top