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EVA sec results for: JPred month: 2000_08

METHOD about:	../../../doc/explain_methods.html#PX_about_jpred
METHOD url:	JPred
TYPE :	sec
NPROT :	1218
NWEEKS :	106
NOTE 1 :	here ALL results obtained for JPred in month 2000_08 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2000_08 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2000_08	dssp	ALL_proteins:psum	73.8	71	85	59	74	84	67	69.2	65.7	66.3	68.3	2.5	0.34	0.33	0.35	0.67	0.58	0.54	7980.3	8.3	6.8
sec	2000_08	dssp	ALL_proteins:sig	9.6	31	35	30	36	11	12	15.0	29.3	26.4	14.8	4.0	0.13	0.14	0.14	0.23	0.25	0.16	7903.8	8.2	7.2
sec	2000_08	dssp	ALL_proteins:errsig	0.27	0.91	1	0.86	1	0.32	0.35	0.43	0.84	0.75	0.42	0.11	0.00	0.00	0.00	0.00	0.00	0.00	226.4	0.23	0.20
sec	2000_08	dssp	THIS_month:psum	75.2	64	72	48	68	85	69	67.9	72.2	58.0	67	2.8	0.33	0.32	0.34	0.62	0.55	0.53	82.3	6.0	7.2

sec	2000_08	dssp	1c3g:A	70.6	31	71	61	79	87	65	66.4	41	70	67	2.3	0.22	0.21	0.24	0.44	0.51	0.49	100.0	5.0	10.0
sec	2000_08	dssp	1crz:A	74.4	38	83	63	86	91	67	71.2	49	73	73	1.2	0.30	0.27	0.33	0.53	0.59	0.55	100.0	5.0	11.0
sec	2000_08	dssp	1de6:A	73.3	80	81	34	48	75	69	71.5	86	41	63	3.1	0.26	0.26	0.27	0.64	0.34	0.52	100.0	0.00	3.0
sec	2000_08	dssp	1dkq:A	76.3	69	86	60	88	89	67	63.7	65	74	57	0.9	0.37	0.36	0.40	0.64	0.69	0.57	100.0	8.0	5.0
sec	2000_08	dssp	1eej:A	80.1	84	85	60	96	87	70	76.6	86	66	72	1.3	0.46	0.45	0.48	0.75	0.71	0.63	0.0	0.00	8.0
sec	2000_08	dssp	1eem:A	84.0	81	93	61	100	92	73	79.0	86	76	69	0.0	0.50	0.49	0.52	0.75	0.77	0.69	100.0	6.0	3.0
sec	2000_08	dssp	1eg3:A	78.1	81	90	28	46	83	65	72.5	81	27	68	2.3	0.33	0.33	0.34	0.68	0.32	0.59	100.0	5.0	3.0
sec	2000_08	dssp	1ej0:A	87.2	88	93	72	100	98	76	97.3	100	92	98	1.6	0.63	0.62	0.65	0.85	0.80	0.78	0.0	2.0	7.0
sec	2000_08	dssp	1emw:A	76.1	100	51	50	91	80	88	73.5	100	59	71	6.8	0.40	0.41	0.41	0.63	0.61	0.66	100.0	17.0	11.0
sec	2000_08	dssp	1eok:A	63.5	27	90	69	53	88	62	59.7	34	82	72	4.9	0.21	0.19	0.23	0.39	0.53	0.41	100.0	25.0	4.0
sec	2000_08	dssp	1evx:A	49.4	0	0	30	37	79	54	35.6	0	39	42	6.7	0.03	0.03	0.04	-0.06	0.08	0.13	100.0	16.0	6.0
sec	2000_08	dssp	1ew4:A	84.0	93	91	67	92	89	74	92.7	100	82	95	0.9	0.56	0.56	0.57	0.89	0.71	0.69	100.0	0.00	8.0
sec	2000_08	dssp	1ezg:A	76.8	0	0	0	0	100	76	11.8	100	0	15	0.0	0.00	0.00	0.00	1.0	1.0	0.00	100.0	0.00	23.0
sec	2000_08	dssp	1f0k:A	81.8	79	88	78	91	86	72	80.4	79	90	77	0.8	0.47	0.47	0.48	0.70	0.82	0.65	100.0	4.0	2.0
sec	2000_08	dssp	1f2t:B	62.2	73	63	36	71	71	56	59.4	64	46	62	15.3	0.17	0.17	0.18	0.39	0.39	0.47	0.0	6.0	13.0
sec	2000_08	dssp	1fgx:A	79.4	80	84	59	79	87	77	72.1	85	70	67	0.0	0.42	0.41	0.44	0.76	0.61	0.58	100.0	1.0	5.0
sec	2000_08	dssp	1qkr:A	81.8	87	91	0	0	70	66	72.5	73	0	71	1.1	0.30	0.33	0.29	0.64	-0.01	0.56	100.0	3.0	2.0

sec	2000_08	dssp	THIS_month:psum	75.2	64	72	48	68	85	69	67.9	72.2	58.0	67	2.8	0.33	0.32	0.34	0.62	0.55	0.53	82.3	6.0	7.2

sec	2000_08	dssp	ALL_proteins:psum	73.8	71	85	59	74	84	67	69.2	65.7	66.3	68.3	2.5	0.34	0.33	0.35	0.67	0.58	0.54	7980.3	8.3	6.8
sec	2000_08	dssp	ALL_proteins:sig	9.6	31	35	30	36	11	12	15.0	29.3	26.4	14.8	4.0	0.13	0.14	0.14	0.23	0.25	0.16	7903.8	8.2	7.2
sec	2000_08	dssp	ALL_proteins:errsig	0.27	0.91	1	0.86	1	0.32	0.35	0.43	0.84	0.75	0.42	0.11	0.00	0.00	0.00	0.00	0.00	0.00	226.4	0.23	0.20

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2000_08
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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