METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2000_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_07 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2000_07 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2000_07 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2000_07 | dssp | THIS_month:psum | 77.8 | 79 | 78 | 46 | 66 | 70 | 67 | 72.7 | 72.6 | 72.5 | 67.3 | 1.9 | 0.35 | 0.34 | 0.36 | 0.61 | 0.69 | 0.52 | 78.9 | 4.1 | 5 |
sec | 2000_07 | dssp | 1c01:A | 61.8 | 0 | 0 | 44 | 72 | 77 | 73 | 63.5 | 0 | 56 | 72 | 9.2 | 0.14 | 0.16 | 0.14 | -0.08 | 0.39 | 0.40 | 100.0 | 11.0 | 14.0 |
sec | 2000_07 | dssp | 1c0n:A | 83.2 | 90 | 81 | 69 | 96 | 81 | 81 | 77.4 | 78 | 76 | 76 | 1.2 | 0.50 | 0.49 | 0.51 | 0.75 | 0.78 | 0.67 | 100.0 | 4.0 | 4.0 |
sec | 2000_07 | dssp | 1c8u:A | 79.3 | 90 | 69 | 70 | 92 | 82 | 75 | 77.2 | 83 | 72 | 79 | 2.4 | 0.44 | 0.45 | 0.44 | 0.73 | 0.71 | 0.63 | 100.0 | 5.0 | 9.0 |
sec | 2000_07 | dssp | 1dk8:A | 77.6 | 89 | 78 | 0 | 0 | 57 | 75 | 77.9 | 84 | 100 | 67 | 0.0 | 0.20 | 0.19 | 0.21 | 0.50 | 1.0 | 0.50 | 100.0 | 8.0 | 0.00 |
sec | 2000_07 | dssp | 1dow:A | 92.2 | 97 | 93 | 0 | 0 | 52 | 76 | 87.0 | 91 | 100 | 57 | 0.0 | 0.33 | 0.29 | 0.38 | 0.59 | 1.0 | 0.59 | 100.0 | 3.0 | 0.00 |
sec | 2000_07 | dssp | 1dow:B | 71.9 | 80 | 77 | 0 | 0 | 54 | 60 | 61.2 | 59 | 100 | 67 | 0.0 | 0.10 | 0.10 | 0.10 | 0.36 | 1.0 | 0.36 | 100.0 | 3.0 | 0.00 |
sec | 2000_07 | dssp | 1dq3:A | 69.6 | 81 | 66 | 58 | 80 | 68 | 65 | 69.0 | 74 | 66 | 66 | 8.3 | 0.26 | 0.27 | 0.27 | 0.58 | 0.56 | 0.50 | 100.0 | 7.0 | 9.0 |
sec | 2000_07 | dssp | 1dqz:A | 78.2 | 78 | 86 | 56 | 78 | 85 | 72 | 75.2 | 77 | 60 | 78 | 0.7 | 0.39 | 0.38 | 0.41 | 0.72 | 0.61 | 0.58 | 100.0 | 3.0 | 4.0 |
sec | 2000_07 | dssp | 1dus:A | 79.9 | 93 | 80 | 55 | 97 | 90 | 72 | 87.9 | 100 | 70 | 93 | 3.6 | 0.49 | 0.48 | 0.51 | 0.80 | 0.66 | 0.67 | 100.0 | 4.0 | 13.0 |
sec | 2000_07 | dssp | 1dvo:A | 83.6 | 91 | 91 | 16 | 100 | 84 | 66 | 57.5 | 57 | 25 | 67 | 1.9 | 0.40 | 0.37 | 0.44 | 0.73 | 0.39 | 0.65 | 0.0 | 0.00 | 6.0 |
sec | 2000_07 | dssp | 1e2t:A | 81.8 | 93 | 81 | 76 | 81 | 76 | 82 | 80.6 | 94 | 77 | 73 | 0.3 | 0.50 | 0.50 | 0.50 | 0.81 | 0.72 | 0.63 | 0.0 | 4.0 | 1.0 |
sec | 2000_07 | dssp | 1ej6:D | 73.4 | 74 | 86 | 60 | 57 | 76 | 66 | 61.1 | 61 | 60 | 60 | 1.6 | 0.30 | 0.30 | 0.30 | 0.65 | 0.52 | 0.49 | 100.0 | 6.0 | 0.00 |
sec | 2000_07 | dssp | 1evl:A | 76.8 | 86 | 80 | 63 | 87 | 76 | 67 | 76.0 | 88 | 70 | 67 | 2.7 | 0.39 | 0.39 | 0.41 | 0.72 | 0.67 | 0.56 | 0.0 | 2.0 | 7.0 |
sec | 2000_07 | dssp | 1f02:T | 60.6 | 88 | 75 | 14 | 100 | 41 | 30 | 49.4 | 74 | 21 | 21 | 0.0 | 0.36 | 0.31 | 0.41 | 0.57 | 0.34 | 0.07 | 0.0 | 9.0 | 18.0 |
sec | 2000_07 | dssp | 1fao:A | 85.0 | 78 | 100 | 81 | 89 | 92 | 76 | 88.7 | 84 | 84 | 97 | 1.0 | 0.56 | 0.55 | 0.57 | 0.86 | 0.75 | 0.72 | 100.0 | 4.0 | 3.0 |
sec | 2000_07 | dssp | 1qjv:A | 76.3 | 36 | 84 | 74 | 73 | 84 | 77 | 69.3 | 43 | 70 | 72 | 2.0 | 0.28 | 0.27 | 0.30 | 0.53 | 0.58 | 0.56 | 100.0 | 4.0 | 0.00 |
sec | 2000_07 | dssp | 1qo2:A | 77.2 | 80 | 85 | 76 | 83 | 73 | 64 | 80.8 | 86 | 89 | 68 | 0.8 | 0.42 | 0.42 | 0.42 | 0.71 | 0.73 | 0.51 | 100.0 | 2.0 | 2.0 |
sec | 2000_07 | dssp | 1qu7:A | 89.0 | 95 | 94 | 0 | 0 | 11 | 25 | 53.7 | 57 | 100 | 11 | 1.7 | 0.11 | 0.12 | 0.10 | 0.31 | 1.0 | 0.12 | 100.0 | 0.00 | 3.0 |
sec | 2000_07 | dssp | 1thf:D | 81.8 | 88 | 87 | 75 | 83 | 79 | 75 | 88.3 | 91 | 83 | 88 | 0.3 | 0.49 | 0.49 | 0.50 | 0.80 | 0.73 | 0.63 | 100.0 | 0.00 | 2.0 |
sec | 2000_07 | dssp | THIS_month:psum | 77.8 | 79 | 78 | 46 | 66 | 70 | 67 | 72.7 | 72.6 | 72.5 | 67.3 | 1.9 | 0.35 | 0.34 | 0.36 | 0.61 | 0.69 | 0.52 | 78.9 | 4.1 | 5 |
sec | 2000_07 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2000_07 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2000_07 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |