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EVA sec results for: PSIpred month: 2000_07

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2000_07 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2000_07 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2000_07	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2000_07	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2000_07	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2000_07	dssp	THIS_month:psum	76.7	72	77	49	56	76	70	71.2	71.3	67.9	69.2	2.9	0.36	0.36	0.36	0.64	0.63	0.55	81.4	5.1	4.7

sec	2000_07	dssp	1c01:A	55.3	0	0	27	88	77	72	39.2	0	27	49	14.4	0.15	0.16	0.15	-0.12	0.38	0.37	100.0	22.0	26.0
sec	2000_07	dssp	1c0n:A	80.0	88	76	77	84	72	81	79.9	87	77	73	1.9	0.42	0.42	0.43	0.69	0.77	0.62	100.0	6.0	1.0
sec	2000_07	dssp	1c7n:A	83.0	87	93	77	69	79	77	77.4	88	76	66	0.2	0.50	0.51	0.50	0.82	0.68	0.64	100.0	2.0	1.0
sec	2000_07	dssp	1c8u:A	83.2	92	78	75	95	85	77	80.9	83	79	81	0.3	0.54	0.54	0.54	0.81	0.77	0.66	100.0	3.0	8.0
sec	2000_07	dssp	1dk8:A	85.7	90	87	0	0	77	82	85.8	86	100	85	0.0	0.38	0.38	0.39	0.68	1.0	0.68	100.0	2.0	0.00
sec	2000_07	dssp	1dow:A	87.8	91	94	0	0	60	50	77.2	78	100	62	0.0	0.21	0.22	0.20	0.47	1.0	0.47	100.0	2.0	0.00
sec	2000_07	dssp	1dow:B	90.6	85	100	0	0	100	78	69.8	61	100	100	0.0	0.62	0.65	0.61	0.82	1.0	0.82	100.0	9.0	0.00
sec	2000_07	dssp	1dq3:A	73.6	83	71	67	81	70	68	71.7	87	63	66	6.1	0.34	0.35	0.35	0.65	0.62	0.54	100.0	5.0	5.0
sec	2000_07	dssp	1dqp:A	71.7	71	89	66	59	74	67	71.0	77	59	72	3.0	0.32	0.32	0.33	0.71	0.50	0.48	0.0	6.0	2.0
sec	2000_07	dssp	1dqz:A	84.3	86	87	78	80	84	82	82.7	82	86	81	1.0	0.49	0.50	0.50	0.78	0.75	0.70	100.0	0.00	0.00
sec	2000_07	dssp	1ds1:A	67.8	64	67	47	70	79	67	62.6	74	45	62	4.3	0.23	0.22	0.24	0.51	0.48	0.45	100.0	1.0	7.0
sec	2000_07	dssp	1ds9:A	59.1	42	63	43	85	79	53	54.8	52	51	57	1.0	0.18	0.16	0.20	0.33	0.55	0.25	100.0	11.0	10.0
sec	2000_07	dssp	1dus:A	89.2	94	96	80	92	91	81	96.8	100	95	95	0.0	0.67	0.67	0.68	0.93	0.80	0.77	100.0	0.00	4.0
sec	2000_07	dssp	1dvo:A	68.4	75	84	0	0	71	56	71.9	87	0	54	10.5	0.18	0.19	0.18	0.45	-0.08	0.49	100.0	7.0	0.00
sec	2000_07	dssp	1e2t:A	73.0	78	78	76	61	67	78	71.4	86	76	60	4.0	0.32	0.33	0.32	0.68	0.56	0.53	100.0	0.00	6.0
sec	2000_07	dssp	1ej6:D	75.3	81	86	67	55	70	70	70.6	82	61	60	0.7	0.36	0.37	0.36	0.71	0.55	0.50	100.0	2.0	2.0
sec	2000_07	dssp	1evl:A	80.5	86	91	80	73	73	75	80.5	89	74	75	1.9	0.47	0.48	0.48	0.82	0.67	0.61	100.0	1.0	2.0
sec	2000_07	dssp	1exk:A	63.3	0	0	66	51	69	70	44.3	0	50	46	0.0	0.12	0.11	0.14	1.0	0.37	0.22	100.0	7.0	8.0
sec	2000_07	dssp	1f02:T	60.6	77	69	21	100	58	41	54.8	73	28	39	7.5	0.14	0.13	0.16	0.39	0.42	0.27	0.0	6.0	16.0
sec	2000_07	dssp	1f0j:A	86.6	88	91	0	0	85	79	80.8	82	0	79	0.5	0.42	0.43	0.42	0.72	-0.00	0.72	100.0	2.0	0.00
sec	2000_07	dssp	1f43:A	83.6	77	88	0	0	90	96	87.9	79	100	96	9.8	0.58	0.68	0.49	0.67	1.0	0.87	0.0	6.0	9.0
sec	2000_07	dssp	1f8x:A	55.1	28	71	72	46	77	53	44.7	26	66	59	9.6	0.13	0.13	0.14	0.25	0.47	0.33	100.0	26.0	8.0
sec	2000_07	dssp	1fao:A	85.0	78	100	81	89	92	76	87.2	84	87	88	1.0	0.56	0.55	0.57	0.86	0.75	0.72	100.0	4.0	3.0
sec	2000_07	dssp	1qjv:A	72.8	53	59	76	70	73	77	66.7	60	65	68	1.1	0.24	0.25	0.25	0.52	0.56	0.47	100.0	0.00	3.0
sec	2000_07	dssp	1qo2:A	80.9	82	92	72	89	84	66	85.7	83	88	86	0.0	0.50	0.50	0.51	0.78	0.75	0.60	0.0	4.0	4.0
sec	2000_07	dssp	1qu7:A	93.8	98	95	0	0	41	63	46.2	46	100	41	0.0	0.24	0.21	0.29	0.48	1.0	0.48	100.0	2.0	0.00
sec	2000_07	dssp	1thf:D	83.0	90	84	75	86	80	80	81.2	94	82	70	1.5	0.49	0.50	0.50	0.79	0.75	0.67	0.0	2.0	3.0

sec	2000_07	dssp	THIS_month:psum	76.7	72	77	49	56	76	70	71.2	71.3	67.9	69.2	2.9	0.36	0.36	0.36	0.64	0.63	0.55	81.4	5.1	4.7

sec	2000_07	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2000_07	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2000_07	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2000_07
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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