METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2000_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_07 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2000_07 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2000_07 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2000_07 | dssp | THIS_month:psum | 74.2 | 72 | 74 | 45 | 58 | 71 | 67 | 70.1 | 69.8 | 66.2 | 66 | 2.8 | 0.30 | 0.30 | 0.31 | 0.60 | 0.61 | 0.49 | 85.1 | 5.6 | 5.2 |
sec | 2000_07 | dssp | 1c01:A | 57.9 | 0 | 0 | 48 | 63 | 68 | 73 | 60.0 | 0 | 54 | 67 | 9.2 | 0.11 | 0.13 | 0.10 | -0.09 | 0.33 | 0.33 | 100.0 | 13.0 | 9.0 |
sec | 2000_07 | dssp | 1c0n:A | 79.7 | 84 | 83 | 71 | 85 | 78 | 74 | 73.5 | 74 | 76 | 70 | 0.2 | 0.44 | 0.44 | 0.45 | 0.72 | 0.73 | 0.59 | 100.0 | 0.00 | 2.0 |
sec | 2000_07 | dssp | 1c7n:A | 82.5 | 85 | 93 | 74 | 70 | 82 | 75 | 74.1 | 82 | 73 | 66 | 0.2 | 0.49 | 0.50 | 0.49 | 0.81 | 0.67 | 0.64 | 100.0 | 4.0 | 0.00 |
sec | 2000_07 | dssp | 1c8u:A | 73.3 | 78 | 67 | 57 | 84 | 85 | 70 | 75.9 | 88 | 64 | 83 | 5.6 | 0.33 | 0.33 | 0.34 | 0.65 | 0.55 | 0.59 | 100.0 | 3.0 | 12.0 |
sec | 2000_07 | dssp | 1dk8:A | 76.2 | 83 | 80 | 0 | 0 | 62 | 69 | 83.3 | 87 | 100 | 76 | 0.0 | 0.18 | 0.19 | 0.19 | 0.49 | 1.0 | 0.47 | 100.0 | 2.0 | 0.00 |
sec | 2000_07 | dssp | 1dow:A | 91.2 | 95 | 94 | 0 | 0 | 60 | 65 | 79.6 | 80 | 100 | 67 | 0.0 | 0.30 | 0.29 | 0.31 | 0.57 | 1.0 | 0.57 | 100.0 | 0.00 | 0.00 |
sec | 2000_07 | dssp | 1dow:B | 75.0 | 80 | 80 | 0 | 0 | 63 | 63 | 54.4 | 57 | 100 | 47 | 0.0 | 0.15 | 0.15 | 0.15 | 0.44 | 1.0 | 0.44 | 100.0 | 0.00 | 0.00 |
sec | 2000_07 | dssp | 1dq3:A | 69.4 | 81 | 72 | 51 | 82 | 75 | 59 | 72.6 | 89 | 59 | 69 | 5.7 | 0.28 | 0.28 | 0.29 | 0.65 | 0.53 | 0.48 | 100.0 | 3.0 | 12.0 |
sec | 2000_07 | dssp | 1dqp:A | 71.3 | 80 | 77 | 75 | 64 | 61 | 69 | 72.0 | 85 | 69 | 62 | 1.7 | 0.32 | 0.32 | 0.32 | 0.67 | 0.59 | 0.43 | 100.0 | 1.0 | 3.0 |
sec | 2000_07 | dssp | 1dqz:A | 77.1 | 62 | 93 | 80 | 74 | 88 | 70 | 70.5 | 57 | 85 | 77 | 1.4 | 0.40 | 0.40 | 0.41 | 0.65 | 0.72 | 0.59 | 100.0 | 12.0 | 1.0 |
sec | 2000_07 | dssp | 1ds1:A | 70.6 | 68 | 73 | 48 | 81 | 82 | 66 | 61.1 | 68 | 49 | 61 | 1.8 | 0.27 | 0.26 | 0.29 | 0.58 | 0.55 | 0.46 | 100.0 | 1.0 | 8.0 |
sec | 2000_07 | dssp | 1ds9:A | 52.0 | 72 | 46 | 29 | 80 | 45 | 54 | 45.9 | 68 | 33 | 33 | 7.0 | 0.10 | 0.09 | 0.11 | 0.26 | 0.41 | 0.15 | 100.0 | 19.0 | 13.0 |
sec | 2000_07 | dssp | 1dus:A | 87.1 | 91 | 91 | 76 | 96 | 93 | 78 | 96.1 | 98 | 95 | 95 | 1.0 | 0.61 | 0.61 | 0.62 | 0.87 | 0.79 | 0.76 | 100.0 | 0.00 | 6.0 |
sec | 2000_07 | dssp | 1dvo:A | 77.0 | 97 | 78 | 8 | 100 | 44 | 68 | 79.6 | 98 | 8 | 50 | 3.9 | 0.24 | 0.19 | 0.31 | 0.53 | 0.27 | 0.44 | 0.0 | 15.0 | 7.0 |
sec | 2000_07 | dssp | 1e2t:A | 71.9 | 84 | 71 | 67 | 61 | 66 | 79 | 70.0 | 89 | 66 | 60 | 5.1 | 0.29 | 0.30 | 0.29 | 0.67 | 0.51 | 0.53 | 0.0 | 5.0 | 2.0 |
sec | 2000_07 | dssp | 1ej6:D | 69.5 | 70 | 87 | 58 | 46 | 72 | 62 | 62.0 | 69 | 55 | 54 | 1.9 | 0.27 | 0.28 | 0.27 | 0.63 | 0.44 | 0.42 | 100.0 | 9.0 | 3.0 |
sec | 2000_07 | dssp | 1evl:A | 73.5 | 81 | 88 | 52 | 84 | 81 | 58 | 74.0 | 86 | 60 | 70 | 0.5 | 0.39 | 0.39 | 0.41 | 0.75 | 0.57 | 0.48 | 0.0 | 2.0 | 10.0 |
sec | 2000_07 | dssp | 1exk:A | 68.4 | 0 | 0 | 70 | 58 | 75 | 74 | 52.1 | 0 | 60 | 54 | 0.0 | 0.17 | 0.15 | 0.20 | 1.0 | 0.46 | 0.32 | 100.0 | 7.0 | 6.0 |
sec | 2000_07 | dssp | 1f02:T | 63.6 | 91 | 78 | 14 | 100 | 47 | 34 | 53.3 | 76 | 21 | 32 | 0.0 | 0.39 | 0.34 | 0.45 | 0.64 | 0.34 | 0.15 | 0.0 | 9.0 | 18.0 |
sec | 2000_07 | dssp | 1f0j:A | 80.6 | 82 | 88 | 0 | 0 | 78 | 77 | 75.8 | 79 | 0 | 70 | 4.0 | 0.32 | 0.35 | 0.29 | 0.61 | -0.01 | 0.65 | 100.0 | 4.0 | 4.0 |
sec | 2000_07 | dssp | 1f43:A | 80.0 | 70 | 91 | 0 | 0 | 89 | 86 | 86.7 | 74 | 100 | 100 | 8.3 | 0.42 | 0.48 | 0.36 | 0.65 | 1.0 | 0.76 | 100.0 | 11.0 | 10.0 |
sec | 2000_07 | dssp | 1f8x:A | 62.2 | 40 | 82 | 64 | 50 | 85 | 58 | 56.0 | 40 | 64 | 69 | 8.3 | 0.18 | 0.18 | 0.19 | 0.40 | 0.47 | 0.45 | 100.0 | 22.0 | 4.0 |
sec | 2000_07 | dssp | 1fao:A | 79.0 | 78 | 78 | 69 | 88 | 89 | 72 | 86.5 | 84 | 81 | 93 | 4.0 | 0.41 | 0.41 | 0.42 | 0.74 | 0.65 | 0.66 | 100.0 | 0.00 | 8.0 |
sec | 2000_07 | dssp | 1qjv:A | 72.5 | 60 | 60 | 72 | 69 | 74 | 76 | 63.7 | 39 | 62 | 68 | 2.0 | 0.23 | 0.24 | 0.24 | 0.56 | 0.52 | 0.48 | 100.0 | 0.00 | 1.0 |
sec | 2000_07 | dssp | 1qo2:A | 74.2 | 69 | 83 | 74 | 81 | 80 | 62 | 79.0 | 76 | 81 | 80 | 3.7 | 0.34 | 0.35 | 0.35 | 0.60 | 0.71 | 0.54 | 100.0 | 7.0 | 2.0 |
sec | 2000_07 | dssp | 1qu7:A | 91.2 | 95 | 95 | 0 | 0 | 35 | 50 | 54.8 | 57 | 100 | 31 | 1.3 | 0.15 | 0.16 | 0.14 | 0.37 | 1.0 | 0.38 | 100.0 | 0.00 | 1.0 |
sec | 2000_07 | dssp | 1thf:D | 78.7 | 81 | 91 | 73 | 72 | 78 | 72 | 80.3 | 87 | 73 | 78 | 1.1 | 0.44 | 0.44 | 0.44 | 0.79 | 0.64 | 0.58 | 100.0 | 3.0 | 0.00 |
sec | 2000_07 | dssp | THIS_month:psum | 74.2 | 72 | 74 | 45 | 58 | 71 | 67 | 70.1 | 69.8 | 66.2 | 66 | 2.8 | 0.30 | 0.30 | 0.31 | 0.60 | 0.61 | 0.49 | 85.1 | 5.6 | 5.2 |
sec | 2000_07 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2000_07 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2000_07 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |