METHOD about: | ../../../doc/explain_methods.html#PX_about_phd |
METHOD url: | PHD |
TYPE : | sec |
NPROT : | 1599 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHD in month 2000_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_06 | dssp | ALL_proteins:psum | 70.9 | 74 | 76 | 60 | 63 | 72 | 69 | 66.9 | 66.2 | 65.3 | 63.5 | 4.2 | 0.28 | 0.28 | 0.28 | 0.61 | 0.52 | 0.48 | 7542.2 | 7.8 | 6.1 |
sec | 2000_06 | dssp | ALL_proteins:sig | 10.8 | 31 | 31 | 30 | 32 | 14 | 12 | 14.2 | 27.8 | 26.4 | 14.8 | 5.1 | 0.24 | 0.27 | 0.22 | 0.25 | 0.26 | 0.15 | 7469.2 | 8.9 | 6.8 |
sec | 2000_06 | dssp | ALL_proteins:errsig | 0.27 | 0.79 | 0.79 | 0.76 | 0.82 | 0.35 | 0.31 | 0.35 | 0.69 | 0.66 | 0.37 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 186.7 | 0.22 | 0.17 |
sec | 2000_06 | dssp | THIS_month:psum | 72.8 | 74 | 78 | 49 | 44 | 72 | 73 | 69.9 | 75.2 | 64.3 | 64.2 | 3.8 | 0.33 | 0.34 | 0.32 | 0.63 | 0.49 | 0.52 | 100 | 4.1 | 5 |
sec | 2000_06 | dssp | 1e01:A | 83.3 | 100 | 100 | 80 | 57 | 73 | 89 | 79.5 | 100 | 92 | 66 | 0.0 | 0.66 | 0.68 | 0.65 | 1.0 | 0.57 | 0.67 | 100.0 | 0.00 | 8.0 |
sec | 2000_06 | dssp | 1e1d:A | 86.6 | 90 | 92 | 0 | 0 | 83 | 79 | 81.7 | 93 | 0 | 64 | 0.9 | 0.44 | 0.45 | 0.44 | 0.76 | -0.01 | 0.72 | 100.0 | 1.0 | 0.00 |
sec | 2000_06 | dssp | 1ef4:A | 78.2 | 89 | 86 | 0 | 0 | 66 | 85 | 72.6 | 100 | 100 | 53 | 0.0 | 0.40 | 0.47 | 0.35 | 0.74 | 1.0 | 0.57 | 100.0 | 1.0 | 9.0 |
sec | 2000_06 | dssp | 1ekj:A | 80.5 | 78 | 89 | 94 | 72 | 76 | 75 | 84.6 | 88 | 84 | 80 | 1.4 | 0.46 | 0.47 | 0.45 | 0.71 | 0.79 | 0.61 | 100.0 | 5.0 | 4.0 |
sec | 2000_06 | dssp | 1eul:A | 69.6 | 68 | 86 | 49 | 40 | 78 | 69 | 63.0 | 67 | 57 | 59 | 7.3 | 0.25 | 0.26 | 0.26 | 0.62 | 0.32 | 0.53 | 100.0 | 8.0 | 3.0 |
sec | 2000_06 | dssp | 1euv:A | 70.1 | 81 | 73 | 53 | 61 | 65 | 69 | 65.5 | 71 | 65 | 59 | 4.9 | 0.26 | 0.26 | 0.27 | 0.58 | 0.49 | 0.47 | 100.0 | 4.0 | 2.0 |
sec | 2000_06 | dssp | 1f15:A | 73.9 | 77 | 63 | 65 | 73 | 78 | 76 | 77.0 | 71 | 72 | 81 | 0.6 | 0.30 | 0.30 | 0.30 | 0.66 | 0.55 | 0.48 | 100.0 | 2.0 | 3.0 |
sec | 2000_06 | dssp | 1qhx:A | 55.6 | 46 | 71 | 69 | 44 | 59 | 52 | 52.6 | 46 | 65 | 55 | 9.5 | 0.13 | 0.14 | 0.13 | 0.34 | 0.42 | 0.27 | 100.0 | 15.0 | 10.0 |
sec | 2000_06 | dssp | 1qqj:A | 58.2 | 45 | 47 | 39 | 52 | 75 | 64 | 52.6 | 41 | 44 | 61 | 10.3 | 0.09 | 0.09 | 0.10 | 0.30 | 0.28 | 0.37 | 100.0 | 1.0 | 6.0 |
sec | 2000_06 | dssp | THIS_month:psum | 72.8 | 74 | 78 | 49 | 44 | 72 | 73 | 69.9 | 75.2 | 64.3 | 64.2 | 3.8 | 0.33 | 0.34 | 0.32 | 0.63 | 0.49 | 0.52 | 100 | 4.1 | 5 |
sec | 2000_06 | dssp | ALL_proteins:psum | 70.9 | 74 | 76 | 60 | 63 | 72 | 69 | 66.9 | 66.2 | 65.3 | 63.5 | 4.2 | 0.28 | 0.28 | 0.28 | 0.61 | 0.52 | 0.48 | 7542.2 | 7.8 | 6.1 |
sec | 2000_06 | dssp | ALL_proteins:sig | 10.8 | 31 | 31 | 30 | 32 | 14 | 12 | 14.2 | 27.8 | 26.4 | 14.8 | 5.1 | 0.24 | 0.27 | 0.22 | 0.25 | 0.26 | 0.15 | 7469.2 | 8.9 | 6.8 |
sec | 2000_06 | dssp | ALL_proteins:errsig | 0.27 | 0.79 | 0.79 | 0.76 | 0.82 | 0.35 | 0.31 | 0.35 | 0.69 | 0.66 | 0.37 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 186.7 | 0.22 | 0.17 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |