METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2000_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_05 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2000_05 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2000_05 | dssp | THIS_month:psum | 74.0 | 71 | 71 | 31 | 62 | 84 | 72 | 74.9 | 77.4 | 66.7 | 77.7 | 4.0 | 0.35 | 0.34 | 0.37 | 0.55 | 0.66 | 0.59 | 85.7 | 6.2 | 7.1 |
sec | 2000_05 | dssp | 1dj0:A | 81.4 | 79 | 86 | 63 | 97 | 92 | 74 | 84.6 | 85 | 83 | 84 | 0.0 | 0.51 | 0.48 | 0.54 | 0.77 | 0.73 | 0.64 | 100.0 | 1.0 | 9.0 |
sec | 2000_05 | dssp | 1dlj:A | 84.1 | 83 | 93 | 72 | 78 | 88 | 77 | 88.0 | 89 | 79 | 89 | 0.2 | 0.51 | 0.51 | 0.51 | 0.80 | 0.71 | 0.68 | 100.0 | 4.0 | 0.00 |
sec | 2000_05 | dssp | 1dny:A | 88.2 | 92 | 86 | 0 | 0 | 82 | 90 | 80.1 | 100 | 100 | 64 | 0.0 | 0.47 | 0.47 | 0.48 | 0.76 | 1.0 | 0.76 | 100.0 | 3.0 | 0.00 |
sec | 2000_05 | dssp | 1du2:A | 60.5 | 74 | 46 | 0 | 0 | 53 | 78 | 65.2 | 73 | 100 | 61 | 0.0 | 0.05 | 0.05 | 0.05 | 0.26 | 1.0 | 0.26 | 0.0 | 21.0 | 0.00 |
sec | 2000_05 | dssp | 1e0b:A | 59.0 | 43 | 36 | 38 | 72 | 87 | 67 | 69.2 | 56 | 47 | 96 | 19.6 | 0.22 | 0.21 | 0.23 | 0.16 | 0.37 | 0.59 | 100.0 | 4.0 | 16.0 |
sec | 2000_05 | dssp | 1ej3:A | 87.2 | 86 | 98 | 12 | 100 | 96 | 73 | 82.9 | 85 | 12 | 87 | 0.0 | 0.54 | 0.52 | 0.58 | 0.82 | 0.34 | 0.75 | 100.0 | 6.0 | 3.0 |
sec | 2000_05 | dssp | 1eq6:A | 57.7 | 42 | 52 | 38 | 90 | 90 | 50 | 54.5 | 54 | 46 | 63 | 8.4 | 0.18 | 0.17 | 0.20 | 0.30 | 0.47 | 0.43 | 100.0 | 5.0 | 22.0 |
sec | 2000_05 | dssp | THIS_month:psum | 74.0 | 71 | 71 | 31 | 62 | 84 | 72 | 74.9 | 77.4 | 66.7 | 77.7 | 4.0 | 0.35 | 0.34 | 0.37 | 0.55 | 0.66 | 0.59 | 85.7 | 6.2 | 7.1 |
sec | 2000_05 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2000_05 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |