METHOD about: | ../../doc/explain_method2.html#PX_about_SAM-T99sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 128 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for samt99_sec in month 2000_10 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_10 | dssp | ALL_proteins:psum | 76.6 | 74 | 48 | 71 | 69 | 59 | 74 | 71.4 | 76.1 | 66.9 | 64.7 | 2.0 | 0.35 | 0.33 | 0.36 | 0.66 | 0.63 | 0.53 | 8125.0 | 6.3 | 5.0 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.8 | 29 | 29 | 19 | 28 | 34 | 16 | 14.6 | 24.4 | 27.1 | 19.2 | 3.3 | 0.15 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 8075.4 | 8.5 | 5.7 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 1 | 2 | 3 | 1 | 1.2 | 2.1 | 2.4 | 1.7 | 0.29 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 713.7 | 0.75 | 0.50 |
sec | 2000_10 | dssp | THIS_month:psum | 75.5 | 71 | 56 | 73 | 67 | 61 | 70 | 68.3 | 75.3 | 67 | 62.5 | 3.1 | 0.34 | 0.35 | 0.33 | 0.68 | 0.63 | 0.55 | 93.3 | 7.1 | 7.7 |
sec | 2000_10 | dssp | 1d6m:A | 80.3 | 84 | 72 | 78 | 88 | 80 | 71 | 73.1 | 85 | 76 | 58 | 0.6 | 0.44 | 0.44 | 0.45 | 0.75 | 0.70 | 0.59 | 100.0 | 1.0 | 1.0 |
sec | 2000_10 | dssp | 1d7b:A | 76.9 | 62 | 58 | 94 | 62 | 94 | 70 | 73.1 | 62 | 69 | 77 | 0.5 | 0.34 | 0.33 | 0.36 | 0.60 | 0.61 | 0.58 | 100.0 | 0.00 | 17.0 |
sec | 2000_10 | dssp | 1dl6:A | 81.0 | 0 | 75 | 82 | 0 | 50 | 95 | 52.4 | 100 | 68 | 50 | 0.0 | 0.23 | 0.29 | 0.17 | 1.0 | 0.53 | 0.44 | 100.0 | 5.0 | 6.0 |
sec | 2000_10 | dssp | 1e68:A | 58.6 | 56 | 0 | 64 | 88 | 0 | 68 | 54.6 | 53 | 100 | 60 | 25.7 | 0.19 | 0.26 | 0.14 | 0.28 | 1.0 | 0.56 | 0.0 | 27.0 | 28.0 |
sec | 2000_10 | dssp | 1ei5:A | 57.7 | 71 | 31 | 71 | 56 | 77 | 53 | 51.9 | 68 | 39 | 52 | 5.7 | 0.15 | 0.15 | 0.17 | 0.49 | 0.36 | 0.29 | 100.0 | 6.0 | 20.0 |
sec | 2000_10 | dssp | 1eje:A | 78.6 | 87 | 76 | 76 | 65 | 95 | 74 | 83.4 | 96 | 81 | 79 | 1.5 | 0.45 | 0.46 | 0.45 | 0.68 | 0.77 | 0.58 | 100.0 | 6.0 | 7.0 |
sec | 2000_10 | dssp | 1f6u:A | 58.2 | 0 | 16 | 91 | 0 | 25 | 60 | 12.7 | 0 | 4 | 19 | 0.0 | 0.06 | 0.03 | 0.10 | 1.0 | 0.12 | -0.07 | 100.0 | 27.0 | 3.0 |
sec | 2000_10 | dssp | 1fho:A | 75.6 | 100 | 61 | 77 | 65 | 75 | 79 | 74.3 | 58 | 64 | 84 | 0.0 | 0.40 | 0.42 | 0.40 | 0.77 | 0.56 | 0.50 | 100.0 | 6.0 | 5.0 |
sec | 2000_10 | dssp | 1fiq:C | 80.9 | 88 | 71 | 81 | 83 | 83 | 77 | 73.7 | 86 | 75 | 65 | 0.5 | 0.47 | 0.47 | 0.47 | 0.79 | 0.70 | 0.62 | 100.0 | 1.0 | 3.0 |
sec | 2000_10 | dssp | 1fq0:A | 83.6 | 98 | 69 | 72 | 85 | 78 | 83 | 86.8 | 97 | 72 | 81 | 0.0 | 0.56 | 0.55 | 0.57 | 0.84 | 0.68 | 0.65 | 100.0 | 7.0 | 1.0 |
sec | 2000_10 | dssp | 1fu9:A | 80.6 | 90 | 100 | 72 | 100 | 36 | 100 | 81.5 | 100 | 33 | 81 | 2.7 | 0.63 | 0.69 | 0.58 | 0.93 | 0.53 | 0.71 | 100.0 | 2.0 | 19.0 |
sec | 2000_10 | dssp | 1fxj:A | 81.3 | 80 | 84 | 79 | 85 | 82 | 78 | 82.2 | 83 | 80 | 82 | 1.2 | 0.46 | 0.47 | 0.47 | 0.76 | 0.76 | 0.64 | 100.0 | 1.0 | 0.00 |
sec | 2000_10 | dssp | 1gd2:E | 87.7 | 100 | 0 | 0 | 87 | 0 | 0 | 74.9 | 85 | 100 | 0 | 0.0 | 0.00 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 100.0 | 12.0 | 0.00 |
sec | 2000_10 | dssp | 1qmu:A | 78.7 | 85 | 64 | 82 | 74 | 84 | 79 | 76.2 | 86 | 69 | 74 | 3.4 | 0.39 | 0.39 | 0.40 | 0.71 | 0.66 | 0.64 | 100.0 | 4.0 | 6.0 |
sec | 2000_10 | dssp | 1qmy:A | 73.1 | 71 | 65 | 78 | 78 | 63 | 75 | 75.0 | 71 | 75 | 76 | 5.7 | 0.30 | 0.30 | 0.31 | 0.65 | 0.51 | 0.57 | 100.0 | 2.0 | 0.00 |
sec | 2000_10 | dssp | THIS_month:psum | 75.5 | 71 | 56 | 73 | 67 | 61 | 70 | 68.3 | 75.3 | 67 | 62.5 | 3.1 | 0.34 | 0.35 | 0.33 | 0.68 | 0.63 | 0.55 | 93.3 | 7.1 | 7.7 |
sec | 2000_10 | dssp | ALL_proteins:psum | 76.6 | 74 | 48 | 71 | 69 | 59 | 74 | 71.4 | 76.1 | 66.9 | 64.7 | 2.0 | 0.35 | 0.33 | 0.36 | 0.66 | 0.63 | 0.53 | 8125.0 | 6.3 | 5.0 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.8 | 29 | 29 | 19 | 28 | 34 | 16 | 14.6 | 24.4 | 27.1 | 19.2 | 3.3 | 0.15 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 8075.4 | 8.5 | 5.7 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 1 | 2 | 3 | 1 | 1.2 | 2.1 | 2.4 | 1.7 | 0.29 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 713.7 | 0.75 | 0.50 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |