METHOD about: | ../../doc/explain_method2.html#PX_about_PSIpred |
METHOD url: | PSIpred |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for psipred in month 2000_10 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_10 | dssp | ALL_proteins:psum | 77.0 | 74 | 52 | 76 | 74 | 55 | 74 | 72.9 | 77.3 | 70.9 | 69.6 | 2.3 | 0.37 | 0.38 | 0.37 | 0.67 | 0.65 | 0.56 | 7918.3 | 5.3 | 4.3 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.5 | 26 | 31 | 12 | 27 | 33 | 12 | 13.8 | 23.2 | 26.0 | 13.9 | 3.3 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.16 | 7855.3 | 6.5 | 5.2 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.60 | 1 | 2 | 0.76 | 1 | 2 | 0.81 | 0.88 | 1.4 | 1.6 | 0.88 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 501.8 | 0.41 | 0.33 |
sec | 2000_10 | dssp | THIS_month:psum | 74.5 | 69 | 46 | 74 | 70 | 51 | 72 | 70.6 | 75.3 | 74.3 | 66.2 | 2.6 | 0.31 | 0.32 | 0.30 | 0.58 | 0.68 | 0.52 | 72.7 | 7.1 | 4.7 |
sec | 2000_10 | dssp | 1c4r:A | 76.7 | 44 | 77 | 79 | 100 | 81 | 70 | 69.8 | 66 | 71 | 67 | 0.0 | 0.31 | 0.30 | 0.32 | 0.65 | 0.59 | 0.53 | 0.0 | 2.0 | 2.0 |
sec | 2000_10 | dssp | 1d7b:A | 69.4 | 50 | 54 | 84 | 25 | 83 | 68 | 62.7 | 62 | 62 | 62 | 3.2 | 0.19 | 0.19 | 0.19 | 0.31 | 0.50 | 0.46 | 100.0 | 4.0 | 15.0 |
sec | 2000_10 | dssp | 1dl6:A | 77.6 | 0 | 75 | 78 | 0 | 42 | 95 | 61.1 | 100 | 62 | 60 | 0.0 | 0.18 | 0.24 | 0.13 | 1.0 | 0.47 | 0.40 | 100.0 | 5.0 | 10.0 |
sec | 2000_10 | dssp | 1e68:A | 65.7 | 69 | 0 | 52 | 82 | 0 | 40 | 56.5 | 65 | 100 | 30 | 4.2 | 0.06 | 0.07 | 0.05 | 0.20 | 1.0 | 0.26 | 100.0 | 11.0 | 4.0 |
sec | 2000_10 | dssp | 1eg2:A | 78.9 | 73 | 61 | 92 | 89 | 97 | 68 | 71.7 | 76 | 73 | 67 | 0.3 | 0.46 | 0.44 | 0.49 | 0.72 | 0.73 | 0.62 | 0.0 | 6.0 | 8.0 |
sec | 2000_10 | dssp | 1ei5:A | 69.5 | 72 | 49 | 85 | 68 | 88 | 63 | 62.6 | 77 | 59 | 57 | 4.6 | 0.28 | 0.27 | 0.29 | 0.59 | 0.55 | 0.51 | 100.0 | 1.0 | 15.0 |
sec | 2000_10 | dssp | 1ezf:A | 81.6 | 87 | 0 | 64 | 89 | 0 | 65 | 78.1 | 85 | 100 | 59 | 0.0 | 0.28 | 0.30 | 0.26 | 0.59 | 1.0 | 0.52 | 100.0 | 1.0 | 2.0 |
sec | 2000_10 | dssp | 1f81:A | 79.3 | 72 | 0 | 96 | 97 | 0 | 58 | 80.6 | 83 | 100 | 72 | 0.0 | 0.34 | 0.37 | 0.32 | 0.62 | 1.0 | 0.62 | 100.0 | 18.0 | 0.00 |
sec | 2000_10 | dssp | 1fft:C | 73.5 | 84 | 0 | 54 | 78 | 0 | 92 | 68.0 | 65 | 100 | 72 | 8.6 | 0.27 | 0.30 | 0.24 | 0.43 | 1.0 | 0.61 | 0.0 | 4.0 | 9.0 |
sec | 2000_10 | dssp | 1fho:A | 72.3 | 93 | 66 | 70 | 50 | 75 | 81 | 74.6 | 65 | 72 | 77 | 1.6 | 0.31 | 0.33 | 0.30 | 0.62 | 0.59 | 0.48 | 100.0 | 10.0 | 3.0 |
sec | 2000_10 | dssp | 1fiq:B | 82.0 | 84 | 86 | 77 | 82 | 82 | 80 | 86.7 | 86 | 90 | 85 | 0.6 | 0.49 | 0.49 | 0.49 | 0.75 | 0.79 | 0.64 | 100.0 | 0.00 | 0.00 |
sec | 2000_10 | dssp | 1fiq:C | 83.0 | 83 | 77 | 85 | 91 | 82 | 78 | 80.0 | 92 | 80 | 71 | 0.2 | 0.51 | 0.51 | 0.52 | 0.81 | 0.73 | 0.66 | 0.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1fl4:A | 75.0 | 91 | 81 | 64 | 68 | 65 | 86 | 72.1 | 94 | 67 | 63 | 0.5 | 0.39 | 0.40 | 0.38 | 0.68 | 0.67 | 0.53 | 0.0 | 9.0 | 4.0 |
sec | 2000_10 | dssp | 1fq0:A | 82.6 | 96 | 75 | 70 | 83 | 79 | 83 | 89.8 | 97 | 84 | 83 | 0.0 | 0.52 | 0.52 | 0.53 | 0.81 | 0.72 | 0.63 | 100.0 | 7.0 | 0.00 |
sec | 2000_10 | dssp | 1fqy:A | 81.0 | 83 | 0 | 76 | 88 | 0 | 88 | 89.5 | 98 | 100 | 78 | 6.1 | 0.37 | 0.43 | 0.32 | 0.65 | 1.0 | 0.72 | 0.0 | 3.0 | 8.0 |
sec | 2000_10 | dssp | 1fu9:A | 41.7 | 70 | 0 | 36 | 31 | 0 | 72 | 55.5 | 85 | 0 | 51 | 11.1 | 0.02 | 0.03 | 0.03 | 0.11 | -0.10 | 0.15 | 100.0 | 33.0 | 2.0 |
sec | 2000_10 | dssp | 1fwq:A | 65.2 | 0 | 32 | 84 | 0 | 75 | 78 | 49.5 | 0 | 36 | 58 | 9.5 | 0.15 | 0.16 | 0.14 | -0.07 | 0.36 | 0.42 | 100.0 | 13.0 | 18.0 |
sec | 2000_10 | dssp | 1fxj:A | 76.5 | 62 | 76 | 86 | 90 | 79 | 69 | 74.2 | 67 | 68 | 83 | 2.1 | 0.39 | 0.38 | 0.41 | 0.67 | 0.68 | 0.58 | 100.0 | 9.0 | 1.0 |
sec | 2000_10 | dssp | 1gd2:E | 84.6 | 85 | 0 | 75 | 96 | 0 | 42 | 60.2 | 59 | 100 | 66 | 0.0 | 0.22 | 0.26 | 0.18 | 0.48 | 1.0 | 0.48 | 100.0 | 9.0 | 0.00 |
sec | 2000_10 | dssp | 1qmu:A | 82.1 | 85 | 75 | 83 | 89 | 77 | 80 | 79.6 | 87 | 82 | 74 | 1.3 | 0.47 | 0.48 | 0.48 | 0.82 | 0.68 | 0.66 | 100.0 | 1.0 | 0.00 |
sec | 2000_10 | dssp | 1qmy:A | 72.4 | 82 | 60 | 72 | 79 | 63 | 72 | 74.0 | 88 | 65 | 70 | 3.2 | 0.31 | 0.31 | 0.32 | 0.72 | 0.48 | 0.50 | 100.0 | 1.0 | 1.0 |
sec | 2000_10 | dssp | 1qnr:A | 68.9 | 59 | 68 | 76 | 80 | 64 | 64 | 58.5 | 61 | 64 | 53 | 2.0 | 0.27 | 0.27 | 0.28 | 0.54 | 0.59 | 0.42 | 100.0 | 9.0 | 1.0 |
sec | 2000_10 | dssp | THIS_month:psum | 74.5 | 69 | 46 | 74 | 70 | 51 | 72 | 70.6 | 75.3 | 74.3 | 66.2 | 2.6 | 0.31 | 0.32 | 0.30 | 0.58 | 0.68 | 0.52 | 72.7 | 7.1 | 4.7 |
sec | 2000_10 | dssp | ALL_proteins:psum | 77.0 | 74 | 52 | 76 | 74 | 55 | 74 | 72.9 | 77.3 | 70.9 | 69.6 | 2.3 | 0.37 | 0.38 | 0.37 | 0.67 | 0.65 | 0.56 | 7918.3 | 5.3 | 4.3 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.5 | 26 | 31 | 12 | 27 | 33 | 12 | 13.8 | 23.2 | 26.0 | 13.9 | 3.3 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.16 | 7855.3 | 6.5 | 5.2 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.60 | 1 | 2 | 0.76 | 1 | 2 | 0.81 | 0.88 | 1.4 | 1.6 | 0.88 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 501.8 | 0.41 | 0.33 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |