Home - sec - acc - cm - fr - con - Bottom - Explain scores

EVA sec results for: JPRED month: 2000_10

METHOD about:	../../doc/explain_method2.html#PX_about_JPRED
METHOD url:	JPRED
TYPE :	sec
NPROT :	192
NWEEKS :	30
NOTE 1 :	here ALL results obtained for jpred in month 2000_10 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2000_10 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2000_10	dssp	ALL_proteins:psum	74.9	64	45	82	73	61	69	69.3	68.7	66.1	69.0	2.4	0.34	0.33	0.35	0.65	0.62	0.53	7604.1	7.5	5.9
sec	2000_10	dssp	ALL_proteins:sig	8.9	28	28	11	30	34	11	15.5	26.8	27.1	16.1	3.5	0.14	0.14	0.14	0.22	0.25	0.15	7547.9	7.1	5.8
sec	2000_10	dssp	ALL_proteins:errsig	0.64	2	2	0.86	2	2	0.83	1.1	1.9	1.9	1.1	0.25	0.01	0.01	0.01	0.01	0.01	0.01	544.7	0.52	0.42
sec	2000_10	dssp	THIS_month:psum	73.5	56	40	85	69	52	69	68.2	65.7	65.7	69.0	3.6	0.31	0.31	0.32	0.64	0.59	0.52	73.9	9.1	7.7

sec	2000_10	dssp	1c4r:A	74.4	44	65	88	100	86	65	74.6	66	71	79	0.0	0.29	0.28	0.32	0.65	0.56	0.52	100.0	2.0	12.0
sec	2000_10	dssp	1d7b:A	73.7	0	59	92	0	87	67	63.1	0	69	62	0.0	0.24	0.21	0.29	1.0	0.56	0.50	100.0	4.0	14.0
sec	2000_10	dssp	1dl6:A	86.2	0	75	88	0	50	95	59.1	100	68	58	0.0	0.25	0.29	0.23	1.0	0.53	0.53	100.0	0.00	6.0
sec	2000_10	dssp	1eg2:A	76.3	67	58	92	87	100	65	65.0	68	73	57	0.3	0.43	0.41	0.47	0.67	0.72	0.58	0.0	7.0	9.0
sec	2000_10	dssp	1ei5:A	66.4	65	41	88	87	85	55	56.8	73	52	51	0.3	0.31	0.28	0.34	0.69	0.47	0.41	100.0	6.0	17.0
sec	2000_10	dssp	1ezf:A	74.7	75	0	71	90	0	53	74.0	78	100	62	1.2	0.17	0.20	0.15	0.48	1.0	0.45	100.0	11.0	2.0
sec	2000_10	dssp	1f3u:A	67.8	46	52	93	36	96	63	72.1	46	71	80	8.4	0.28	0.28	0.29	0.31	0.57	0.57	100.0	3.0	22.0
sec	2000_10	dssp	1f6u:A	56.4	0	16	88	0	20	60	12.0	0	3	18	0.0	0.06	0.04	0.10	1.0	0.09	-0.11	100.0	27.0	1.0
sec	2000_10	dssp	1f81:A	74.7	64	0	100	100	0	53	80.5	83	100	72	0.0	0.35	0.38	0.33	0.58	1.0	0.58	0.0	25.0	0.00
sec	2000_10	dssp	1fft:C	66.5	62	0	74	88	0	75	69.7	64	100	79	15.6	0.24	0.30	0.18	0.45	1.0	0.61	0.0	18.0	19.0
sec	2000_10	dssp	1fho:A	63.9	86	36	73	37	59	80	60.0	74	39	65	10.9	0.20	0.21	0.19	0.47	0.29	0.49	100.0	16.0	11.0
sec	2000_10	dssp	1fiq:B	71.8	76	50	80	68	70	75	76.2	76	61	84	8.1	0.26	0.26	0.28	0.57	0.49	0.59	0.0	3.0	6.0
sec	2000_10	dssp	1fiq:C	77.6	71	61	91	90	87	69	70.6	77	67	67	0.5	0.42	0.40	0.45	0.73	0.66	0.59	0.0	6.0	7.0
sec	2000_10	dssp	1fl4:A	76.0	76	63	79	70	67	82	78.5	78	60	85	3.6	0.31	0.32	0.31	0.62	0.58	0.59	100.0	2.0	1.0
sec	2000_10	dssp	1fq0:A	84.5	89	69	85	94	78	77	89.1	93	79	88	0.0	0.54	0.54	0.55	0.85	0.68	0.68	100.0	2.0	1.0
sec	2000_10	dssp	1fqy:A	70.4	58	0	89	93	0	77	82.9	76	100	92	15.9	0.35	0.43	0.28	0.51	1.0	0.72	0.0	23.0	17.0
sec	2000_10	dssp	1fu9:A	83.3	90	0	95	100	0	80	72.4	100	0	72	0.0	0.61	0.53	0.70	0.93	-0.05	0.65	100.0	2.0	8.0
sec	2000_10	dssp	1fwq:A	61.7	0	29	80	0	52	76	50.7	0	32	62	9.5	0.09	0.10	0.09	-0.06	0.20	0.35	100.0	11.0	13.0
sec	2000_10	dssp	1fxj:A	78.9	68	75	88	92	87	68	77.4	83	67	81	0.0	0.47	0.46	0.49	0.73	0.74	0.59	100.0	7.0	4.0
sec	2000_10	dssp	1gd2:E	92.3	94	0	75	96	0	66	82.6	85	100	65	0.0	0.39	0.41	0.38	0.66	1.0	0.66	100.0	1.0	0.00
sec	2000_10	dssp	1qmu:A	78.4	69	66	90	97	80	71	77.6	69	79	82	0.5	0.44	0.42	0.47	0.76	0.65	0.60	100.0	8.0	4.0
sec	2000_10	dssp	1qmy:A	66.7	58	47	82	81	54	65	64.9	64	59	67	6.4	0.22	0.21	0.23	0.59	0.35	0.48	100.0	8.0	3.0
sec	2000_10	dssp	1qnr:A	68.0	50	59	87	95	55	62	60.5	59	63	60	3.7	0.27	0.26	0.28	0.59	0.47	0.47	100.0	18.0	1.0

sec	2000_10	dssp	THIS_month:psum	73.5	56	40	85	69	52	69	68.2	65.7	65.7	69.0	3.6	0.31	0.31	0.32	0.64	0.59	0.52	73.9	9.1	7.7

sec	2000_10	dssp	ALL_proteins:psum	74.9	64	45	82	73	61	69	69.3	68.7	66.1	69.0	2.4	0.34	0.33	0.35	0.65	0.62	0.53	7604.1	7.5	5.9
sec	2000_10	dssp	ALL_proteins:sig	8.9	28	28	11	30	34	11	15.5	26.8	27.1	16.1	3.5	0.14	0.14	0.14	0.22	0.25	0.15	7547.9	7.1	5.8
sec	2000_10	dssp	ALL_proteins:errsig	0.64	2	2	0.86	2	2	0.83	1.1	1.9	1.9	1.1	0.25	0.01	0.01	0.01	0.01	0.01	0.01	544.7	0.52	0.42

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

All results

Explain scores - Home - sec - acc - cm - fr - con - Top