METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec5 |
METHOD url: | EVAjury_sec5 |
TYPE : | sec |
NPROT : | 135 |
NWEEKS : | 22 |
NOTE 1 : | here ALL results obtained for eva5 in month 2000_10 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_10 | dssp | ALL_proteins:psum | 78.3 | 73 | 51 | 77 | 74 | 60 | 75 | 73.7 | 77.8 | 70.1 | 69.2 | 1.9 | 0.45 | 0.43 | 0.47 | 0.70 | 0.65 | 0.57 | 8222.2 | 5.5 | 4.6 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.3 | 28 | 30 | 13 | 28 | 34 | 11 | 14.3 | 23.9 | 26.7 | 15.5 | 3.0 | 0.74 | 0.65 | 0.84 | 0.20 | 0.25 | 0.17 | 8170.4 | 7.2 | 5.4 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 1 | 2 | 2 | 0.95 | 1.2 | 2.0 | 2.3 | 1.3 | 0.26 | 0.06 | 0.05 | 0.07 | 0.01 | 0.02 | 0.01 | 703.1 | 0.62 | 0.47 |
sec | 2000_10 | dssp | THIS_month:psum | 76.5 | 70 | 48 | 79 | 70 | 56 | 76 | 72.1 | 75.8 | 70.1 | 70.9 | 3.4 | 0.35 | 0.36 | 0.35 | 0.65 | 0.63 | 0.57 | 75 | 5.7 | 6.5 |
sec | 2000_10 | dssp | 1d7b:A | 74.7 | 50 | 57 | 92 | 80 | 88 | 68 | 70.6 | 62 | 65 | 76 | 0.0 | 0.29 | 0.27 | 0.32 | 0.62 | 0.56 | 0.52 | 100.0 | 1.0 | 16.0 |
sec | 2000_10 | dssp | 1dl6:A | 81.0 | 0 | 75 | 82 | 0 | 50 | 95 | 51.3 | 100 | 68 | 49 | 0.0 | 0.23 | 0.29 | 0.17 | 1.0 | 0.53 | 0.44 | 100.0 | 5.0 | 6.0 |
sec | 2000_10 | dssp | 1e68:A | 55.7 | 50 | 0 | 70 | 87 | 0 | 57 | 55.5 | 55 | 100 | 57 | 24.2 | 0.16 | 0.22 | 0.12 | 0.23 | 1.0 | 0.50 | 0.0 | 31.0 | 25.0 |
sec | 2000_10 | dssp | 1eg2:A | 76.7 | 78 | 61 | 83 | 76 | 90 | 71 | 73.3 | 76 | 76 | 69 | 2.5 | 0.38 | 0.37 | 0.39 | 0.65 | 0.69 | 0.58 | 0.0 | 0.00 | 7.0 |
sec | 2000_10 | dssp | 1ei5:A | 68.0 | 68 | 45 | 87 | 74 | 87 | 59 | 59.5 | 75 | 54 | 55 | 2.8 | 0.28 | 0.27 | 0.30 | 0.62 | 0.51 | 0.46 | 100.0 | 1.0 | 16.0 |
sec | 2000_10 | dssp | 1fho:A | 74.0 | 100 | 55 | 77 | 55 | 80 | 79 | 66.3 | 60 | 59 | 71 | 1.6 | 0.35 | 0.37 | 0.35 | 0.70 | 0.55 | 0.50 | 100.0 | 10.0 | 9.0 |
sec | 2000_10 | dssp | 1fiq:B | 76.7 | 83 | 70 | 74 | 77 | 66 | 83 | 79.4 | 80 | 73 | 81 | 5.9 | 0.36 | 0.36 | 0.36 | 0.69 | 0.58 | 0.64 | 100.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1fiq:C | 81.3 | 85 | 73 | 83 | 87 | 80 | 77 | 76.1 | 90 | 79 | 65 | 0.8 | 0.47 | 0.47 | 0.47 | 0.80 | 0.69 | 0.64 | 0.0 | 0.00 | 2.0 |
sec | 2000_10 | dssp | 1fq0:A | 85.0 | 96 | 66 | 80 | 89 | 80 | 81 | 88.7 | 98 | 70 | 86 | 0.0 | 0.56 | 0.56 | 0.58 | 0.86 | 0.68 | 0.68 | 100.0 | 3.0 | 2.0 |
sec | 2000_10 | dssp | 1fqy:A | 81.0 | 82 | 0 | 77 | 87 | 0 | 81 | 82.9 | 91 | 100 | 72 | 3.9 | 0.33 | 0.37 | 0.29 | 0.63 | 1.0 | 0.67 | 0.0 | 3.0 | 5.0 |
sec | 2000_10 | dssp | 1fu9:A | 66.7 | 100 | 0 | 63 | 55 | 0 | 82 | 60.4 | 100 | 0 | 55 | 2.7 | 0.29 | 0.28 | 0.32 | 0.62 | -0.05 | 0.41 | 100.0 | 22.0 | 8.0 |
sec | 2000_10 | dssp | 1fwq:A | 68.7 | 0 | 48 | 81 | 0 | 60 | 77 | 63.3 | 0 | 49 | 72 | 3.4 | 0.09 | 0.10 | 0.10 | -0.03 | 0.35 | 0.37 | 100.0 | 2.0 | 6.0 |
sec | 2000_10 | dssp | 1fxj:A | 83.8 | 82 | 87 | 82 | 89 | 84 | 79 | 79.8 | 76 | 73 | 88 | 0.3 | 0.53 | 0.54 | 0.54 | 0.80 | 0.79 | 0.67 | 100.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1gd2:E | 95.4 | 98 | 0 | 75 | 96 | 0 | 85 | 84.7 | 86 | 100 | 75 | 0.0 | 0.54 | 0.52 | 0.57 | 0.77 | 1.0 | 0.77 | 100.0 | 1.0 | 0.00 |
sec | 2000_10 | dssp | 1qmu:A | 81.6 | 81 | 73 | 86 | 91 | 79 | 77 | 84.9 | 84 | 82 | 87 | 0.7 | 0.47 | 0.47 | 0.48 | 0.81 | 0.68 | 0.65 | 100.0 | 3.0 | 1.0 |
sec | 2000_10 | dssp | 1qmy:A | 75.0 | 69 | 62 | 85 | 88 | 62 | 75 | 77.4 | 80 | 74 | 77 | 5.7 | 0.34 | 0.34 | 0.35 | 0.71 | 0.49 | 0.62 | 100.0 | 6.0 | 0.00 |
sec | 2000_10 | dssp | THIS_month:psum | 76.5 | 70 | 48 | 79 | 70 | 56 | 76 | 72.1 | 75.8 | 70.1 | 70.9 | 3.4 | 0.35 | 0.36 | 0.35 | 0.65 | 0.63 | 0.57 | 75 | 5.7 | 6.5 |
sec | 2000_10 | dssp | ALL_proteins:psum | 78.3 | 73 | 51 | 77 | 74 | 60 | 75 | 73.7 | 77.8 | 70.1 | 69.2 | 1.9 | 0.45 | 0.43 | 0.47 | 0.70 | 0.65 | 0.57 | 8222.2 | 5.5 | 4.6 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.3 | 28 | 30 | 13 | 28 | 34 | 11 | 14.3 | 23.9 | 26.7 | 15.5 | 3.0 | 0.74 | 0.65 | 0.84 | 0.20 | 0.25 | 0.17 | 8170.4 | 7.2 | 5.4 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 1 | 2 | 2 | 0.95 | 1.2 | 2.0 | 2.3 | 1.3 | 0.26 | 0.06 | 0.05 | 0.07 | 0.01 | 0.02 | 0.01 | 703.1 | 0.62 | 0.47 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |