METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec3 |
METHOD url: | EVAjury_sec3 |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for eva3 in month 2000_10 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_10 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_10 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
sec | 2000_10 | dssp | THIS_month:psum | 75.9 | 71 | 46 | 75 | 71 | 50 | 74 | 72.1 | 74.1 | 75.3 | 69.4 | 2.9 | 0.33 | 0.34 | 0.32 | 0.60 | 0.68 | 0.55 | 72.7 | 6.4 | 4.5 |
sec | 2000_10 | dssp | 1c4r:A | 79.4 | 55 | 83 | 77 | 83 | 81 | 76 | 73.8 | 66 | 82 | 66 | 0.0 | 0.35 | 0.34 | 0.36 | 0.66 | 0.64 | 0.58 | 0.0 | 1.0 | 1.0 |
sec | 2000_10 | dssp | 1d7b:A | 69.9 | 50 | 57 | 82 | 21 | 87 | 69 | 63.5 | 53 | 65 | 63 | 3.2 | 0.21 | 0.22 | 0.20 | 0.27 | 0.54 | 0.47 | 100.0 | 5.0 | 15.0 |
sec | 2000_10 | dssp | 1dl6:A | 81.0 | 0 | 75 | 82 | 0 | 40 | 95 | 61.7 | 100 | 56 | 62 | 0.0 | 0.18 | 0.22 | 0.15 | 1.0 | 0.44 | 0.44 | 100.0 | 0.00 | 12.0 |
sec | 2000_10 | dssp | 1e68:A | 61.4 | 64 | 0 | 52 | 80 | 0 | 42 | 53.0 | 60 | 100 | 30 | 10.0 | 0.08 | 0.10 | 0.06 | 0.14 | 1.0 | 0.28 | 0.0 | 15.0 | 10.0 |
sec | 2000_10 | dssp | 1eg2:A | 80.0 | 73 | 69 | 91 | 87 | 95 | 71 | 79.0 | 75 | 87 | 77 | 0.7 | 0.46 | 0.45 | 0.48 | 0.70 | 0.77 | 0.63 | 0.0 | 5.0 | 6.0 |
sec | 2000_10 | dssp | 1ei5:A | 68.9 | 72 | 44 | 87 | 64 | 95 | 63 | 59.4 | 78 | 49 | 57 | 5.7 | 0.29 | 0.28 | 0.31 | 0.57 | 0.55 | 0.52 | 100.0 | 3.0 | 18.0 |
sec | 2000_10 | dssp | 1ezf:A | 81.0 | 87 | 0 | 61 | 89 | 0 | 65 | 76.5 | 80 | 100 | 65 | 0.3 | 0.26 | 0.29 | 0.24 | 0.58 | 1.0 | 0.51 | 100.0 | 1.0 | 2.0 |
sec | 2000_10 | dssp | 1f81:A | 82.8 | 75 | 0 | 100 | 100 | 0 | 62 | 81.6 | 83 | 100 | 76 | 0.0 | 0.46 | 0.49 | 0.43 | 0.68 | 1.0 | 0.68 | 100.0 | 17.0 | 0.00 |
sec | 2000_10 | dssp | 1fft:C | 73.0 | 84 | 0 | 51 | 77 | 0 | 85 | 66.8 | 66 | 100 | 67 | 6.4 | 0.21 | 0.23 | 0.19 | 0.41 | 1.0 | 0.54 | 0.0 | 6.0 | 7.0 |
sec | 2000_10 | dssp | 1fho:A | 72.3 | 100 | 66 | 69 | 65 | 64 | 79 | 72.8 | 63 | 62 | 81 | 0.0 | 0.37 | 0.39 | 0.35 | 0.77 | 0.50 | 0.45 | 100.0 | 6.0 | 0.00 |
sec | 2000_10 | dssp | 1fiq:B | 79.3 | 83 | 76 | 77 | 77 | 80 | 79 | 82.1 | 78 | 83 | 84 | 2.6 | 0.41 | 0.42 | 0.42 | 0.70 | 0.72 | 0.63 | 100.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1fiq:C | 83.0 | 83 | 78 | 85 | 91 | 82 | 78 | 77.1 | 91 | 75 | 69 | 0.1 | 0.51 | 0.51 | 0.52 | 0.81 | 0.74 | 0.66 | 0.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1fl4:A | 79.2 | 82 | 78 | 77 | 69 | 70 | 89 | 80.9 | 73 | 83 | 84 | 4.1 | 0.39 | 0.40 | 0.38 | 0.64 | 0.68 | 0.67 | 100.0 | 5.0 | 2.0 |
sec | 2000_10 | dssp | 1fq0:A | 85.9 | 96 | 77 | 77 | 87 | 82 | 85 | 89.4 | 97 | 84 | 83 | 0.0 | 0.58 | 0.58 | 0.59 | 0.85 | 0.76 | 0.70 | 100.0 | 4.0 | 0.00 |
sec | 2000_10 | dssp | 1fqy:A | 79.2 | 81 | 0 | 75 | 88 | 0 | 89 | 91.6 | 93 | 100 | 87 | 7.9 | 0.37 | 0.43 | 0.31 | 0.62 | 1.0 | 0.72 | 0.0 | 4.0 | 10.0 |
sec | 2000_10 | dssp | 1fu9:A | 52.8 | 100 | 0 | 40 | 43 | 0 | 81 | 62.0 | 100 | 0 | 56 | 5.5 | 0.19 | 0.18 | 0.20 | 0.46 | -0.08 | 0.28 | 100.0 | 36.0 | 5.0 |
sec | 2000_10 | dssp | 1fwq:A | 68.7 | 0 | 48 | 81 | 0 | 62 | 82 | 58.8 | 0 | 56 | 62 | 7.8 | 0.18 | 0.19 | 0.17 | -0.05 | 0.37 | 0.48 | 100.0 | 7.0 | 6.0 |
sec | 2000_10 | dssp | 1fxj:A | 80.4 | 72 | 80 | 85 | 90 | 82 | 74 | 77.2 | 81 | 66 | 83 | 1.5 | 0.45 | 0.45 | 0.47 | 0.75 | 0.73 | 0.64 | 100.0 | 5.0 | 0.00 |
sec | 2000_10 | dssp | 1gd2:E | 89.2 | 91 | 0 | 75 | 96 | 0 | 54 | 63.4 | 63 | 100 | 66 | 0.0 | 0.30 | 0.33 | 0.27 | 0.58 | 1.0 | 0.58 | 100.0 | 4.0 | 0.00 |
sec | 2000_10 | dssp | 1qmu:A | 82.4 | 81 | 76 | 86 | 90 | 80 | 79 | 84.8 | 84 | 83 | 86 | 1.0 | 0.48 | 0.48 | 0.49 | 0.80 | 0.70 | 0.67 | 100.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1qmy:A | 69.2 | 73 | 57 | 72 | 75 | 58 | 70 | 72.1 | 80 | 65 | 70 | 5.1 | 0.25 | 0.25 | 0.25 | 0.64 | 0.44 | 0.48 | 100.0 | 0.00 | 0.00 |
sec | 2000_10 | dssp | 1qnr:A | 70.9 | 61 | 67 | 80 | 92 | 54 | 67 | 60.2 | 67 | 62 | 54 | 3.4 | 0.29 | 0.30 | 0.30 | 0.64 | 0.51 | 0.49 | 100.0 | 12.0 | 4.0 |
sec | 2000_10 | dssp | THIS_month:psum | 75.9 | 71 | 46 | 75 | 71 | 50 | 74 | 72.1 | 74.1 | 75.3 | 69.4 | 2.9 | 0.33 | 0.34 | 0.32 | 0.60 | 0.68 | 0.55 | 72.7 | 6.4 | 4.5 |
sec | 2000_10 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_10 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |