METHOD about: | ../../doc/explain_method2.html#PX_about_SAM-T99sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 128 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for samt99_sec in month 2000_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_09 | dssp | ALL_proteins:psum | 76.6 | 74 | 48 | 71 | 69 | 59 | 74 | 71.4 | 76.1 | 66.9 | 64.7 | 2.0 | 0.35 | 0.33 | 0.36 | 0.66 | 0.63 | 0.53 | 8125.0 | 6.3 | 5.0 |
sec | 2000_09 | dssp | ALL_proteins:sig | 9.8 | 29 | 29 | 19 | 28 | 34 | 16 | 14.6 | 24.4 | 27.1 | 19.2 | 3.3 | 0.15 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 8075.4 | 8.5 | 5.7 |
sec | 2000_09 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 1 | 2 | 3 | 1 | 1.2 | 2.1 | 2.4 | 1.7 | 0.29 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 713.7 | 0.75 | 0.50 |
sec | 2000_09 | dssp | THIS_month:psum | 71.1 | 74 | 48 | 65 | 52 | 45 | 80 | 63.3 | 67.8 | 62.9 | 56.9 | 3.1 | 0.29 | 0.29 | 0.29 | 0.48 | 0.62 | 0.51 | 41.6 | 10.9 | 6.5 |
sec | 2000_09 | dssp | 1d2o:A | 69.0 | 0 | 63 | 85 | 0 | 87 | 54 | 74.4 | 0 | 79 | 72 | 0.5 | 0.18 | 0.18 | 0.19 | -0.01 | 0.48 | 0.44 | 0.0 | 2.0 | 17.0 |
sec | 2000_09 | dssp | 1d2p:A | 59.0 | 0 | 46 | 87 | 0 | 85 | 48 | 53.8 | 0 | 52 | 62 | 3.2 | 0.12 | 0.12 | 0.12 | -0.03 | 0.35 | 0.36 | 0.0 | 1.0 | 28.0 |
sec | 2000_09 | dssp | 1fjf:C | 65.5 | 81 | 69 | 52 | 60 | 52 | 83 | 59.2 | 62 | 62 | 56 | 6.7 | 0.21 | 0.22 | 0.22 | 0.51 | 0.50 | 0.47 | 0.0 | 12.0 | 5.0 |
sec | 2000_09 | dssp | 1fjf:I | 70.1 | 85 | 85 | 56 | 61 | 69 | 80 | 38.8 | 80 | 85 | 23 | 0.0 | 0.35 | 0.36 | 0.34 | 0.57 | 0.71 | 0.42 | 100.0 | 11.0 | 3.0 |
sec | 2000_09 | dssp | 1fjf:T | 85.9 | 98 | 0 | 59 | 83 | 0 | 95 | 86.9 | 100 | 100 | 65 | 0.0 | 0.41 | 0.37 | 0.46 | 0.67 | 1.0 | 0.67 | 100.0 | 12.0 | 0.00 |
sec | 2000_09 | dssp | 1fjg:C | 64.6 | 83 | 66 | 51 | 57 | 50 | 87 | 59.4 | 61 | 54 | 59 | 7.2 | 0.21 | 0.22 | 0.21 | 0.50 | 0.47 | 0.48 | 0.0 | 14.0 | 5.0 |
sec | 2000_09 | dssp | 1fjg:I | 72.4 | 86 | 74 | 61 | 67 | 76 | 76 | 52.0 | 79 | 81 | 33 | 1.5 | 0.34 | 0.34 | 0.34 | 0.61 | 0.69 | 0.47 | 0.0 | 9.0 | 0.00 |
sec | 2000_09 | dssp | 1fjg:J | 70.4 | 100 | 54 | 63 | 64 | 52 | 91 | 73.1 | 97 | 41 | 76 | 8.1 | 0.37 | 0.39 | 0.37 | 0.71 | 0.37 | 0.60 | 0.0 | 14.0 | 1.0 |
sec | 2000_09 | dssp | 1fjg:L | 77.6 | 90 | 78 | 75 | 39 | 68 | 94 | 70.2 | 92 | 76 | 67 | 2.4 | 0.35 | 0.39 | 0.31 | 0.54 | 0.65 | 0.60 | 100.0 | 10.0 | 3.0 |
sec | 2000_09 | dssp | 1fjg:M | 72.8 | 77 | 50 | 68 | 76 | 11 | 78 | 64.3 | 80 | 25 | 54 | 1.6 | 0.23 | 0.25 | 0.21 | 0.56 | 0.21 | 0.49 | 0.0 | 0.00 | 5.0 |
sec | 2000_09 | dssp | 1fjg:N | 55.0 | 100 | 0 | 50 | 35 | 0 | 86 | 54.1 | 86 | 0 | 53 | 6.6 | 0.16 | 0.14 | 0.19 | 0.41 | 1.0 | 0.33 | 100.0 | 40.0 | 11.0 |
sec | 2000_09 | dssp | 1fjg:T | 91.9 | 98 | 0 | 73 | 91 | 0 | 95 | 74.2 | 77 | 100 | 63 | 0.0 | 0.55 | 0.52 | 0.59 | 0.78 | 1.0 | 0.78 | 100.0 | 6.0 | 0.00 |
sec | 2000_09 | dssp | THIS_month:psum | 71.1 | 74 | 48 | 65 | 52 | 45 | 80 | 63.3 | 67.8 | 62.9 | 56.9 | 3.1 | 0.29 | 0.29 | 0.29 | 0.48 | 0.62 | 0.51 | 41.6 | 10.9 | 6.5 |
sec | 2000_09 | dssp | ALL_proteins:psum | 76.6 | 74 | 48 | 71 | 69 | 59 | 74 | 71.4 | 76.1 | 66.9 | 64.7 | 2.0 | 0.35 | 0.33 | 0.36 | 0.66 | 0.63 | 0.53 | 8125.0 | 6.3 | 5.0 |
sec | 2000_09 | dssp | ALL_proteins:sig | 9.8 | 29 | 29 | 19 | 28 | 34 | 16 | 14.6 | 24.4 | 27.1 | 19.2 | 3.3 | 0.15 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 8075.4 | 8.5 | 5.7 |
sec | 2000_09 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 1 | 2 | 3 | 1 | 1.2 | 2.1 | 2.4 | 1.7 | 0.29 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 713.7 | 0.75 | 0.50 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |