METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec5 |
METHOD url: | EVAjury_sec5 |
TYPE : | sec |
NPROT : | 135 |
NWEEKS : | 22 |
NOTE 1 : | here ALL results obtained for eva5 in month 2000_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_09 | dssp | ALL_proteins:psum | 78.3 | 73 | 51 | 77 | 74 | 60 | 75 | 73.7 | 77.8 | 70.1 | 69.2 | 1.9 | 0.45 | 0.43 | 0.47 | 0.70 | 0.65 | 0.57 | 8222.2 | 5.5 | 4.6 |
sec | 2000_09 | dssp | ALL_proteins:sig | 9.3 | 28 | 30 | 13 | 28 | 34 | 11 | 14.3 | 23.9 | 26.7 | 15.5 | 3.0 | 0.74 | 0.65 | 0.84 | 0.20 | 0.25 | 0.17 | 8170.4 | 7.2 | 5.4 |
sec | 2000_09 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 1 | 2 | 2 | 0.95 | 1.2 | 2.0 | 2.3 | 1.3 | 0.26 | 0.06 | 0.05 | 0.07 | 0.01 | 0.02 | 0.01 | 703.1 | 0.62 | 0.47 |
sec | 2000_09 | dssp | THIS_month:psum | 75.5 | 72 | 55 | 71 | 64 | 53 | 81 | 72.3 | 69.6 | 68.5 | 68.6 | 2.5 | 0.35 | 0.35 | 0.36 | 0.71 | 0.58 | 0.57 | 50 | 7.5 | 5.4 |
sec | 2000_09 | dssp | 1d2o:A | 65.2 | 0 | 58 | 82 | 0 | 84 | 50 | 68.8 | 0 | 69 | 73 | 0.0 | 0.13 | 0.13 | 0.15 | 1.0 | 0.41 | 0.36 | 0.0 | 3.0 | 18.0 |
sec | 2000_09 | dssp | 1d2p:A | 64.6 | 0 | 53 | 90 | 0 | 90 | 50 | 61.2 | 0 | 64 | 62 | 0.2 | 0.16 | 0.15 | 0.18 | 1.0 | 0.45 | 0.41 | 0.0 | 4.0 | 24.0 |
sec | 2000_09 | dssp | 1fjf:C | 65.0 | 77 | 66 | 55 | 62 | 50 | 78 | 65.5 | 78 | 60 | 59 | 6.3 | 0.20 | 0.21 | 0.20 | 0.50 | 0.47 | 0.43 | 0.0 | 8.0 | 5.0 |
sec | 2000_09 | dssp | 1fjf:I | 86.6 | 97 | 80 | 81 | 82 | 80 | 91 | 77.7 | 85 | 85 | 71 | 0.0 | 0.59 | 0.60 | 0.58 | 0.84 | 0.77 | 0.73 | 100.0 | 5.0 | 0.00 |
sec | 2000_09 | dssp | 1fjf:K | 91.6 | 86 | 93 | 92 | 96 | 90 | 89 | 92.3 | 90 | 97 | 90 | 0.0 | 0.70 | 0.70 | 0.71 | 0.88 | 0.89 | 0.83 | 100.0 | 2.0 | 0.00 |
sec | 2000_09 | dssp | 1fjf:T | 82.8 | 100 | 0 | 46 | 79 | 0 | 100 | 73.1 | 76 | 100 | 65 | 0.0 | 0.39 | 0.32 | 0.47 | 0.61 | 1.0 | 0.61 | 100.0 | 17.0 | 0.00 |
sec | 2000_09 | dssp | 1fjg:B | 81.9 | 87 | 85 | 75 | 82 | 75 | 83 | 72.4 | 89 | 86 | 58 | 0.4 | 0.44 | 0.45 | 0.44 | 0.70 | 0.78 | 0.64 | 100.0 | 2.0 | 1.0 |
sec | 2000_09 | dssp | 1fjg:C | 64.6 | 78 | 66 | 54 | 59 | 50 | 81 | 67.6 | 77 | 55 | 65 | 6.3 | 0.20 | 0.21 | 0.20 | 0.50 | 0.47 | 0.44 | 0.0 | 10.0 | 5.0 |
sec | 2000_09 | dssp | 1fjg:I | 86.6 | 97 | 66 | 87 | 89 | 85 | 84 | 86.2 | 85 | 81 | 89 | 0.7 | 0.59 | 0.59 | 0.61 | 0.89 | 0.70 | 0.74 | 0.0 | 3.0 | 4.0 |
sec | 2000_09 | dssp | 1fjg:J | 68.4 | 96 | 45 | 65 | 66 | 45 | 84 | 68.5 | 100 | 37 | 67 | 8.1 | 0.34 | 0.35 | 0.34 | 0.71 | 0.28 | 0.54 | 0.0 | 11.0 | 0.00 |
sec | 2000_09 | dssp | 1fjg:L | 83.2 | 60 | 82 | 86 | 85 | 67 | 89 | 85.5 | 70 | 78 | 89 | 0.0 | 0.40 | 0.40 | 0.40 | 0.69 | 0.66 | 0.61 | 100.0 | 2.0 | 4.0 |
sec | 2000_09 | dssp | 1fjg:M | 69.6 | 64 | 50 | 75 | 82 | 6 | 76 | 63.4 | 69 | 5 | 60 | 5.6 | 0.20 | 0.23 | 0.18 | 0.54 | 0.14 | 0.50 | 0.0 | 10.0 | 11.0 |
sec | 2000_09 | dssp | 1fjg:N | 58.3 | 76 | 28 | 57 | 41 | 20 | 88 | 55.8 | 76 | 42 | 52 | 8.3 | 0.12 | 0.13 | 0.11 | 0.39 | 0.11 | 0.40 | 100.0 | 18.0 | 4.0 |
sec | 2000_09 | dssp | 1fjg:T | 88.9 | 100 | 0 | 57 | 86 | 0 | 100 | 75.5 | 80 | 100 | 61 | 0.0 | 0.50 | 0.43 | 0.58 | 0.70 | 1.0 | 0.70 | 100.0 | 11.0 | 0.00 |
sec | 2000_09 | dssp | THIS_month:psum | 75.5 | 72 | 55 | 71 | 64 | 53 | 81 | 72.3 | 69.6 | 68.5 | 68.6 | 2.5 | 0.35 | 0.35 | 0.36 | 0.71 | 0.58 | 0.57 | 50 | 7.5 | 5.4 |
sec | 2000_09 | dssp | ALL_proteins:psum | 78.3 | 73 | 51 | 77 | 74 | 60 | 75 | 73.7 | 77.8 | 70.1 | 69.2 | 1.9 | 0.45 | 0.43 | 0.47 | 0.70 | 0.65 | 0.57 | 8222.2 | 5.5 | 4.6 |
sec | 2000_09 | dssp | ALL_proteins:sig | 9.3 | 28 | 30 | 13 | 28 | 34 | 11 | 14.3 | 23.9 | 26.7 | 15.5 | 3.0 | 0.74 | 0.65 | 0.84 | 0.20 | 0.25 | 0.17 | 8170.4 | 7.2 | 5.4 |
sec | 2000_09 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 1 | 2 | 2 | 0.95 | 1.2 | 2.0 | 2.3 | 1.3 | 0.26 | 0.06 | 0.05 | 0.07 | 0.01 | 0.02 | 0.01 | 703.1 | 0.62 | 0.47 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |