METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec3 |
METHOD url: | EVAjury_sec3 |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for eva3 in month 2000_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_07 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_07 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_07 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
sec | 2000_07 | dssp | THIS_month:psum | 78.9 | 73 | 53 | 78 | 78 | 59 | 72 | 74.9 | 71.7 | 71.7 | 74.3 | 2.4 | 0.40 | 0.39 | 0.40 | 0.69 | 0.66 | 0.59 | 86.1 | 4.4 | 4.2 |
sec | 2000_07 | dssp | 1c01:A | 59.2 | 0 | 37 | 77 | 0 | 84 | 75 | 57.8 | 0 | 41 | 72 | 13.1 | 0.18 | 0.20 | 0.17 | -0.11 | 0.43 | 0.43 | 100.0 | 19.0 | 21.0 |
sec | 2000_07 | dssp | 1c0n:A | 80.2 | 87 | 73 | 76 | 79 | 86 | 79 | 80.2 | 87 | 76 | 74 | 1.4 | 0.43 | 0.42 | 0.44 | 0.70 | 0.75 | 0.62 | 100.0 | 4.0 | 2.0 |
sec | 2000_07 | dssp | 1c7n:A | 83.0 | 84 | 77 | 83 | 94 | 71 | 76 | 77.7 | 87 | 75 | 68 | 0.2 | 0.50 | 0.51 | 0.50 | 0.81 | 0.69 | 0.65 | 100.0 | 4.0 | 1.0 |
sec | 2000_07 | dssp | 1c7o:A | 82.7 | 84 | 77 | 82 | 92 | 73 | 76 | 76.9 | 88 | 75 | 66 | 0.2 | 0.49 | 0.50 | 0.49 | 0.80 | 0.70 | 0.64 | 100.0 | 3.0 | 1.0 |
sec | 2000_07 | dssp | 1c8u:A | 82.5 | 94 | 72 | 86 | 78 | 95 | 76 | 79.2 | 84 | 73 | 83 | 0.7 | 0.53 | 0.53 | 0.53 | 0.82 | 0.74 | 0.66 | 100.0 | 3.0 | 9.0 |
sec | 2000_07 | dssp | 1dk8:A | 83.7 | 89 | 0 | 74 | 85 | 0 | 80 | 86.6 | 87 | 100 | 85 | 0.0 | 0.33 | 0.33 | 0.34 | 0.64 | 1.0 | 0.64 | 100.0 | 2.0 | 0.00 |
sec | 2000_07 | dssp | 1dov:A | 95.6 | 97 | 0 | 80 | 97 | 0 | 80 | 87.7 | 86 | 100 | 97 | 0.0 | 0.55 | 0.55 | 0.55 | 0.78 | 1.0 | 0.78 | 100.0 | 0.00 | 0.00 |
sec | 2000_07 | dssp | 1dow:A | 89.8 | 93 | 0 | 64 | 94 | 0 | 57 | 75.3 | 75 | 100 | 71 | 0.0 | 0.27 | 0.28 | 0.26 | 0.54 | 1.0 | 0.54 | 100.0 | 1.0 | 0.00 |
sec | 2000_07 | dssp | 1dow:B | 87.5 | 80 | 0 | 100 | 100 | 0 | 73 | 67.9 | 59 | 100 | 100 | 0.0 | 0.55 | 0.58 | 0.54 | 0.77 | 1.0 | 0.77 | 100.0 | 12.0 | 0.00 |
sec | 2000_07 | dssp | 1dq3:A | 76.2 | 85 | 68 | 74 | 72 | 86 | 71 | 76.2 | 91 | 69 | 69 | 5.9 | 0.37 | 0.37 | 0.38 | 0.67 | 0.67 | 0.59 | 100.0 | 5.0 | 7.0 |
sec | 2000_07 | dssp | 1dqn:A | 72.2 | 72 | 67 | 74 | 88 | 61 | 67 | 74.3 | 77 | 66 | 76 | 3.0 | 0.33 | 0.33 | 0.33 | 0.70 | 0.52 | 0.49 | 0.0 | 6.0 | 2.0 |
sec | 2000_07 | dssp | 1dqp:A | 72.6 | 73 | 67 | 74 | 89 | 60 | 68 | 73.2 | 77 | 63 | 74 | 3.0 | 0.33 | 0.34 | 0.34 | 0.72 | 0.52 | 0.50 | 0.0 | 6.0 | 3.0 |
sec | 2000_07 | dssp | 1dqy:A | 88.0 | 86 | 84 | 90 | 93 | 82 | 86 | 89.1 | 88 | 92 | 88 | 1.0 | 0.58 | 0.58 | 0.58 | 0.83 | 0.80 | 0.78 | 100.0 | 2.0 | 0.00 |
sec | 2000_07 | dssp | 1dqz:A | 85.7 | 81 | 84 | 89 | 91 | 82 | 82 | 81.8 | 73 | 92 | 86 | 1.0 | 0.53 | 0.53 | 0.54 | 0.78 | 0.80 | 0.73 | 100.0 | 4.0 | 0.00 |
sec | 2000_07 | dssp | 1ds0:A | 69.3 | 70 | 38 | 82 | 66 | 75 | 69 | 64.0 | 82 | 37 | 64 | 5.5 | 0.24 | 0.23 | 0.26 | 0.54 | 0.46 | 0.51 | 100.0 | 1.0 | 10.0 |
sec | 2000_07 | dssp | 1ds1:A | 69.3 | 70 | 38 | 82 | 66 | 75 | 69 | 64.0 | 82 | 37 | 64 | 5.5 | 0.24 | 0.23 | 0.26 | 0.54 | 0.46 | 0.51 | 100.0 | 1.0 | 10.0 |
sec | 2000_07 | dssp | 1ds9:A | 62.6 | 55 | 43 | 77 | 67 | 90 | 55 | 57.2 | 56 | 52 | 59 | 0.5 | 0.22 | 0.21 | 0.24 | 0.42 | 0.57 | 0.29 | 100.0 | 6.0 | 10.0 |
sec | 2000_07 | dssp | 1dus:A | 89.2 | 93 | 80 | 93 | 96 | 92 | 81 | 96.7 | 100 | 95 | 95 | 0.5 | 0.66 | 0.66 | 0.67 | 0.92 | 0.80 | 0.78 | 100.0 | 1.0 | 4.0 |
sec | 2000_07 | dssp | 1dvo:A | 75.0 | 85 | 0 | 71 | 83 | 0 | 65 | 76.1 | 92 | 0 | 56 | 8.5 | 0.25 | 0.25 | 0.27 | 0.51 | -0.06 | 0.57 | 0.0 | 1.0 | 3.0 |
sec | 2000_07 | dssp | 1e2t:A | 76.3 | 81 | 75 | 73 | 83 | 62 | 80 | 80.3 | 88 | 79 | 75 | 3.6 | 0.38 | 0.39 | 0.38 | 0.75 | 0.57 | 0.59 | 100.0 | 0.00 | 4.0 |
sec | 2000_07 | dssp | 1ej6:D | 75.5 | 79 | 67 | 73 | 89 | 55 | 69 | 70.8 | 75 | 62 | 67 | 0.7 | 0.36 | 0.37 | 0.36 | 0.71 | 0.55 | 0.51 | 100.0 | 5.0 | 2.0 |
sec | 2000_07 | dssp | 1evk:A | 78.6 | 84 | 81 | 70 | 87 | 73 | 73 | 74.5 | 85 | 70 | 67 | 1.2 | 0.44 | 0.45 | 0.44 | 0.78 | 0.68 | 0.56 | 100.0 | 1.0 | 2.0 |
sec | 2000_07 | dssp | 1evl:A | 79.8 | 84 | 80 | 73 | 92 | 74 | 71 | 76.4 | 86 | 72 | 68 | 1.2 | 0.47 | 0.47 | 0.47 | 0.81 | 0.68 | 0.58 | 100.0 | 3.0 | 2.0 |
sec | 2000_07 | dssp | 1exk:A | 65.8 | 0 | 75 | 69 | 0 | 54 | 73 | 48.4 | 0 | 50 | 52 | 0.0 | 0.16 | 0.15 | 0.19 | 1.0 | 0.44 | 0.28 | 100.0 | 7.0 | 11.0 |
sec | 2000_07 | dssp | 1f02:T | 66.7 | 88 | 21 | 58 | 75 | 100 | 45 | 57.7 | 74 | 28 | 48 | 4.5 | 0.25 | 0.23 | 0.29 | 0.57 | 0.42 | 0.31 | 0.0 | 9.0 | 16.0 |
sec | 2000_07 | dssp | 1f0j:A | 85.2 | 85 | 0 | 85 | 91 | 0 | 77 | 81.0 | 82 | 0 | 78 | 1.1 | 0.40 | 0.41 | 0.39 | 0.69 | -0.00 | 0.70 | 100.0 | 4.0 | 0.00 |
sec | 2000_07 | dssp | 1f37:A | 76.1 | 72 | 82 | 75 | 85 | 57 | 83 | 73.7 | 72 | 84 | 70 | 4.5 | 0.37 | 0.38 | 0.37 | 0.70 | 0.58 | 0.61 | 100.0 | 4.0 | 9.0 |
sec | 2000_07 | dssp | 1f39:A | 84.2 | 0 | 82 | 91 | 0 | 86 | 82 | 86.7 | 0 | 93 | 88 | 0.0 | 0.42 | 0.38 | 0.47 | 1.0 | 0.75 | 0.67 | 100.0 | 3.0 | 1.0 |
sec | 2000_07 | dssp | 1f43:A | 83.6 | 77 | 0 | 90 | 88 | 0 | 96 | 87.9 | 79 | 100 | 96 | 9.8 | 0.58 | 0.68 | 0.49 | 0.67 | 1.0 | 0.87 | 0.0 | 6.0 | 9.0 |
sec | 2000_07 | dssp | 1f8x:A | 59.0 | 36 | 68 | 80 | 78 | 48 | 56 | 54.5 | 34 | 66 | 72 | 8.3 | 0.16 | 0.16 | 0.16 | 0.34 | 0.47 | 0.38 | 100.0 | 23.0 | 6.0 |
sec | 2000_07 | dssp | 1fao:A | 87.0 | 84 | 83 | 92 | 100 | 90 | 79 | 92.5 | 84 | 93 | 95 | 1.0 | 0.60 | 0.59 | 0.61 | 0.90 | 0.77 | 0.75 | 100.0 | 3.0 | 2.0 |
sec | 2000_07 | dssp | 1fb8:A | 88.7 | 80 | 86 | 95 | 100 | 92 | 81 | 93.9 | 85 | 95 | 96 | 0.9 | 0.63 | 0.63 | 0.65 | 0.87 | 0.82 | 0.79 | 100.0 | 3.0 | 2.0 |
sec | 2000_07 | dssp | 1qjv:A | 74.0 | 60 | 76 | 74 | 62 | 71 | 78 | 63.9 | 45 | 68 | 63 | 1.1 | 0.26 | 0.27 | 0.27 | 0.57 | 0.57 | 0.50 | 100.0 | 0.00 | 2.0 |
sec | 2000_07 | dssp | 1qo2:A | 79.3 | 74 | 81 | 84 | 91 | 90 | 63 | 85.7 | 83 | 92 | 83 | 0.0 | 0.49 | 0.49 | 0.49 | 0.71 | 0.81 | 0.57 | 100.0 | 8.0 | 2.0 |
sec | 2000_07 | dssp | 1qu7:A | 93.0 | 97 | 0 | 41 | 95 | 0 | 53 | 46.3 | 46 | 100 | 41 | 0.0 | 0.20 | 0.18 | 0.22 | 0.43 | 1.0 | 0.43 | 100.0 | 1.0 | 0.00 |
sec | 2000_07 | dssp | 1thf:D | 83.8 | 89 | 78 | 81 | 89 | 84 | 78 | 82.8 | 94 | 89 | 70 | 0.3 | 0.53 | 0.53 | 0.53 | 0.82 | 0.75 | 0.67 | 100.0 | 0.00 | 1.0 |
sec | 2000_07 | dssp | THIS_month:psum | 78.9 | 73 | 53 | 78 | 78 | 59 | 72 | 74.9 | 71.7 | 71.7 | 74.3 | 2.4 | 0.40 | 0.39 | 0.40 | 0.69 | 0.66 | 0.59 | 86.1 | 4.4 | 4.2 |
sec | 2000_07 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_07 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_07 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |