METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 329 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2003_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_08 | dssp | ALL_proteins:psum | 75.4 | 84 | 78 | 63 | 74 | 74 | 73 | 71.4 | 76.7 | 73.0 | 66.6 | 2.7 | 0.35 | 0.36 | 0.35 | 0.69 | 0.61 | 0.54 | 8632.2 | 7.3 | 6.4 |
sec | 2003_08 | dssp | ALL_proteins:sig | 10.7 | 34 | 32 | 38 | 44 | 17 | 15 | 15.5 | 26.1 | 27.4 | 18.7 | 4.8 | 0.17 | 0.17 | 0.17 | 0.25 | 0.28 | 0.19 | 8558.9 | 7.7 | 7.1 |
sec | 2003_08 | dssp | ALL_proteins:errsig | 0.59 | 1 | 1 | 2 | 2 | 0.97 | 0.84 | 0.85 | 1.4 | 1.5 | 1.0 | 0.26 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 471.8 | 0.42 | 0.39 |
sec | 2003_08 | dssp | THIS_month:psum | 77.9 | 81 | 87 | 22 | 35 | 70 | 66 | 70.6 | 81 | 74 | 56.5 | 0.37 | 0.28 | 0.27 | 0.3 | 0.59 | 0.75 | 0.52 | 100 | 6.7 | 2.7 |
sec | 2003_08 | dssp | 1ouo:A | 64.3 | 58 | 91 | 25 | 64 | 88 | 51 | 54.1 | 64 | 33 | 51 | 0.4 | 0.25 | 0.23 | 0.29 | 0.59 | 0.33 | 0.39 | 100.0 | 16.0 | 10.0 |
sec | 2003_08 | dssp | 1pv6:A | 85.1 | 91 | 90 | 0 | 0 | 60 | 62 | 76.3 | 84 | 100 | 51 | 0.0 | 0.23 | 0.23 | 0.23 | 0.52 | 1.0 | 0.52 | 100.0 | 0.00 | 0.00 |
sec | 2003_08 | dssp | 1pw4:A | 77.9 | 91 | 79 | 0 | 0 | 48 | 72 | 68.1 | 85 | 100 | 43 | 0.0 | 0.17 | 0.16 | 0.19 | 0.45 | 1.0 | 0.45 | 100.0 | 10.0 | 0.00 |
sec | 2003_08 | dssp | 1q3k:A | 84.6 | 86 | 90 | 66 | 76 | 87 | 80 | 84.2 | 91 | 63 | 81 | 1.1 | 0.48 | 0.48 | 0.49 | 0.79 | 0.68 | 0.71 | 100.0 | 1.0 | 1.0 |
sec | 2003_08 | dssp | THIS_month:psum | 77.9 | 81 | 87 | 22 | 35 | 70 | 66 | 70.6 | 81 | 74 | 56.5 | 0.37 | 0.28 | 0.27 | 0.3 | 0.59 | 0.75 | 0.52 | 100 | 6.7 | 2.7 |
sec | 2003_08 | dssp | ALL_proteins:psum | 75.4 | 84 | 78 | 63 | 74 | 74 | 73 | 71.4 | 76.7 | 73.0 | 66.6 | 2.7 | 0.35 | 0.36 | 0.35 | 0.69 | 0.61 | 0.54 | 8632.2 | 7.3 | 6.4 |
sec | 2003_08 | dssp | ALL_proteins:sig | 10.7 | 34 | 32 | 38 | 44 | 17 | 15 | 15.5 | 26.1 | 27.4 | 18.7 | 4.8 | 0.17 | 0.17 | 0.17 | 0.25 | 0.28 | 0.19 | 8558.9 | 7.7 | 7.1 |
sec | 2003_08 | dssp | ALL_proteins:errsig | 0.59 | 1 | 1 | 2 | 2 | 0.97 | 0.84 | 0.85 | 1.4 | 1.5 | 1.0 | 0.26 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 471.8 | 0.42 | 0.39 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |