METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 373 |
NWEEKS : | 78 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2003_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_08 | dssp | ALL_proteins:psum | 75.0 | 77 | 82 | 70 | 68 | 75 | 73 | 72.2 | 71.2 | 75.7 | 67.8 | 3.0 | 0.35 | 0.35 | 0.35 | 0.68 | 0.60 | 0.55 | 8391.4 | 7.4 | 6.4 |
sec | 2003_08 | dssp | ALL_proteins:sig | 11.5 | 37 | 38 | 42 | 40 | 15 | 13 | 16.0 | 31.4 | 26.5 | 17.0 | 5.3 | 0.17 | 0.17 | 0.17 | 0.28 | 0.28 | 0.19 | 8318.7 | 8.1 | 8.0 |
sec | 2003_08 | dssp | ALL_proteins:errsig | 0.60 | 1 | 1 | 2 | 2 | 0.79 | 0.71 | 0.83 | 1.6 | 1.3 | 0.88 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 430.7 | 0.42 | 0.41 |
sec | 2003_08 | dssp | THIS_month:psum | 64.2 | 62 | 83 | 20 | 15 | 64 | 56 | 55.4 | 58 | 69.5 | 50.5 | 7.9 | 0.15 | 0.15 | 0.15 | 0.40 | 0.61 | 0.38 | 75 | 17 | 6.5 |
sec | 2003_08 | dssp | 1ouo:A | 56.2 | 48 | 86 | 38 | 33 | 73 | 50 | 47.9 | 54 | 37 | 44 | 6.6 | 0.14 | 0.14 | 0.15 | 0.48 | 0.21 | 0.29 | 100.0 | 20.0 | 2.0 |
sec | 2003_08 | dssp | 1pv6:A | 59.0 | 61 | 85 | 0 | 0 | 50 | 42 | 53.1 | 56 | 100 | 40 | 17.9 | 0.07 | 0.10 | 0.05 | 0.14 | 1.0 | 0.31 | 0.0 | 23.0 | 19.0 |
sec | 2003_08 | dssp | 1pw4:A | 81.5 | 92 | 82 | 0 | 0 | 58 | 77 | 73.1 | 73 | 100 | 71 | 0.0 | 0.25 | 0.23 | 0.27 | 0.55 | 1.0 | 0.55 | 100.0 | 7.0 | 0.00 |
sec | 2003_08 | dssp | 1q3k:A | 60.2 | 48 | 81 | 43 | 30 | 77 | 58 | 47.7 | 49 | 41 | 47 | 7.3 | 0.13 | 0.13 | 0.13 | 0.43 | 0.26 | 0.37 | 100.0 | 18.0 | 5.0 |
sec | 2003_08 | dssp | THIS_month:psum | 64.2 | 62 | 83 | 20 | 15 | 64 | 56 | 55.4 | 58 | 69.5 | 50.5 | 7.9 | 0.15 | 0.15 | 0.15 | 0.40 | 0.61 | 0.38 | 75 | 17 | 6.5 |
sec | 2003_08 | dssp | ALL_proteins:psum | 75.0 | 77 | 82 | 70 | 68 | 75 | 73 | 72.2 | 71.2 | 75.7 | 67.8 | 3.0 | 0.35 | 0.35 | 0.35 | 0.68 | 0.60 | 0.55 | 8391.4 | 7.4 | 6.4 |
sec | 2003_08 | dssp | ALL_proteins:sig | 11.5 | 37 | 38 | 42 | 40 | 15 | 13 | 16.0 | 31.4 | 26.5 | 17.0 | 5.3 | 0.17 | 0.17 | 0.17 | 0.28 | 0.28 | 0.19 | 8318.7 | 8.1 | 8.0 |
sec | 2003_08 | dssp | ALL_proteins:errsig | 0.60 | 1 | 1 | 2 | 2 | 0.79 | 0.71 | 0.83 | 1.6 | 1.3 | 0.88 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 430.7 | 0.42 | 0.41 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |