METHOD about: | ../../../doc/explain_methods.html#PX_about_psipred |
METHOD url: | PSIpred |
TYPE : | sec |
NPROT : | 374 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for PSIpred in month 2003_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_07 | dssp | ALL_proteins:psum | 75.9 | 82 | 80 | 66 | 73 | 75 | 74 | 73.0 | 77.9 | 72.9 | 69.1 | 2.8 | 0.37 | 0.37 | 0.37 | 0.69 | 0.61 | 0.56 | 8529.4 | 7.0 | 5.7 |
sec | 2003_07 | dssp | ALL_proteins:sig | 12.1 | 32 | 32 | 39 | 43 | 14 | 13 | 17.3 | 24.8 | 29.0 | 18.3 | 4.6 | 0.17 | 0.17 | 0.18 | 0.25 | 0.29 | 0.19 | 8455.5 | 8.8 | 7.1 |
sec | 2003_07 | dssp | ALL_proteins:errsig | 0.62 | 1 | 1 | 2 | 2 | 0.76 | 0.70 | 0.89 | 1.2 | 1.5 | 0.95 | 0.24 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 437.2 | 0.45 | 0.36 |
sec | 2003_07 | dssp | THIS_month:psum | 82.2 | 90 | 81 | 61 | 57 | 70 | 88 | 74.8 | 88 | 82 | 67.7 | 1.2 | 0.48 | 0.48 | 0.49 | 0.76 | 0.77 | 0.66 | 100 | 7 | 3.2 |
sec | 2003_07 | dssp | 1hk9:A | 81.2 | 76 | 90 | 90 | 77 | 71 | 83 | 72.1 | 76 | 63 | 81 | 4.6 | 0.48 | 0.47 | 0.49 | 0.79 | 0.66 | 0.67 | 100.0 | 3.0 | 7.0 |
sec | 2003_07 | dssp | 1m12:A | 88.1 | 98 | 85 | 0 | 0 | 70 | 95 | 86.7 | 92 | 100 | 77 | 0.0 | 0.49 | 0.46 | 0.52 | 0.74 | 1.0 | 0.74 | 100.0 | 9.0 | 0.00 |
sec | 2003_07 | dssp | 1nsl:A | 75.0 | 100 | 66 | 87 | 70 | 55 | 91 | 65.5 | 100 | 92 | 45 | 0.0 | 0.48 | 0.49 | 0.47 | 0.72 | 0.72 | 0.54 | 100.0 | 15.0 | 4.0 |
sec | 2003_07 | dssp | 1p5h:A | 84.5 | 89 | 85 | 69 | 82 | 84 | 84 | 75.1 | 84 | 73 | 68 | 0.2 | 0.50 | 0.50 | 0.51 | 0.79 | 0.72 | 0.69 | 100.0 | 1.0 | 2.0 |
sec | 2003_07 | dssp | THIS_month:psum | 82.2 | 90 | 81 | 61 | 57 | 70 | 88 | 74.8 | 88 | 82 | 67.7 | 1.2 | 0.48 | 0.48 | 0.49 | 0.76 | 0.77 | 0.66 | 100 | 7 | 3.2 |
sec | 2003_07 | dssp | ALL_proteins:psum | 75.9 | 82 | 80 | 66 | 73 | 75 | 74 | 73.0 | 77.9 | 72.9 | 69.1 | 2.8 | 0.37 | 0.37 | 0.37 | 0.69 | 0.61 | 0.56 | 8529.4 | 7.0 | 5.7 |
sec | 2003_07 | dssp | ALL_proteins:sig | 12.1 | 32 | 32 | 39 | 43 | 14 | 13 | 17.3 | 24.8 | 29.0 | 18.3 | 4.6 | 0.17 | 0.17 | 0.18 | 0.25 | 0.29 | 0.19 | 8455.5 | 8.8 | 7.1 |
sec | 2003_07 | dssp | ALL_proteins:errsig | 0.62 | 1 | 1 | 2 | 2 | 0.76 | 0.70 | 0.89 | 1.2 | 1.5 | 0.95 | 0.24 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 437.2 | 0.45 | 0.36 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |