| METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
| METHOD url: | PROFsec |
| TYPE : | sec |
| NPROT : | 373 |
| NWEEKS : | 78 |
| NOTE 1 : | here ALL results obtained for PROFsec in month 2001_04 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2001_04 | dssp | ALL_proteins:psum | 75.0 | 77 | 82 | 70 | 68 | 75 | 73 | 72.2 | 71.2 | 75.7 | 67.8 | 3.0 | 0.35 | 0.35 | 0.35 | 0.68 | 0.60 | 0.55 | 8391.4 | 7.4 | 6.4 |
| sec | 2001_04 | dssp | ALL_proteins:sig | 11.5 | 37 | 38 | 42 | 40 | 15 | 13 | 16.0 | 31.4 | 26.5 | 17.0 | 5.3 | 0.17 | 0.17 | 0.17 | 0.28 | 0.28 | 0.19 | 8318.7 | 8.1 | 8.0 |
| sec | 2001_04 | dssp | ALL_proteins:errsig | 0.60 | 1 | 1 | 2 | 2 | 0.79 | 0.71 | 0.83 | 1.6 | 1.3 | 0.88 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 430.7 | 0.42 | 0.41 |
| sec | 2001_04 | dssp | THIS_month:psum | 80.9 | 0 | 0 | 97 | 68 | 69 | 97 | 88.3 | 100 | 90 | 86 | 0 | 0.4 | 0.4 | 0.4 | 1 | 0.66 | 0.66 | 0 | 0 | 17 |
| sec | 2001_04 | dssp | 1i85:A | 80.9 | 0 | 0 | 97 | 68 | 69 | 97 | 88.3 | 100 | 90 | 86 | 0.0 | 0.40 | 0.40 | 0.40 | 1.0 | 0.66 | 0.66 | 0.0 | 0.00 | 17.0 |
| sec | 2001_04 | dssp | THIS_month:psum | 80.9 | 0 | 0 | 97 | 68 | 69 | 97 | 88.3 | 100 | 90 | 86 | 0 | 0.4 | 0.4 | 0.4 | 1 | 0.66 | 0.66 | 0 | 0 | 17 |
| sec | 2001_04 | dssp | ALL_proteins:psum | 75.0 | 77 | 82 | 70 | 68 | 75 | 73 | 72.2 | 71.2 | 75.7 | 67.8 | 3.0 | 0.35 | 0.35 | 0.35 | 0.68 | 0.60 | 0.55 | 8391.4 | 7.4 | 6.4 |
| sec | 2001_04 | dssp | ALL_proteins:sig | 11.5 | 37 | 38 | 42 | 40 | 15 | 13 | 16.0 | 31.4 | 26.5 | 17.0 | 5.3 | 0.17 | 0.17 | 0.17 | 0.28 | 0.28 | 0.19 | 8318.7 | 8.1 | 8.0 |
| sec | 2001_04 | dssp | ALL_proteins:errsig | 0.60 | 1 | 1 | 2 | 2 | 0.79 | 0.71 | 0.83 | 1.6 | 1.3 | 0.88 | 0.27 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 430.7 | 0.42 | 0.41 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |