EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	220	36	method/index.html

APSSP	212	35	method/apssp.html
APSSP2	192	33	method/apssp2.html
JPred	169	31	method/jpred.html
PHD	153	23	method/phd.html
PHDpsi	152	23	method/phdpsi.html
PROF_king	164	31	method/prof_king.html
PROFsec	153	23	method/profsec.html
Prospect	118	25	method/prospect.html
PSIpred	198	35	method/psipred.html
PSSP	1	1	method/pssp.html
SAM-T99sec	170	34	method/samt99_sec.html
SSpro1	1	1	method/sspro1.html
SSpro2	217	36	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 38 proteins and 10 methods (HTML - ASCII)
- set 2: 66 proteins and 8 methods (HTML - ASCII)
- set 3: 66 proteins and 7 methods (HTML - ASCII)
- set 4: 96 proteins and 6 methods (HTML - ASCII)
- set 5: 111 proteins and 5 methods (HTML - ASCII)
- set 6: 149 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	38	dssp	1	APSSP2	75.5	+/-1.5	70.8	+/-2.5	2.4	+/-0.5	0.37	+/-0.03	0.66	+/-0.04	0.58	+/-0.04	0.53	+/-0.03	89.5	+/-5.0
				JPred	73.0	+/-1.5	70.0	+/-2.5	1.9	+/-0.4	0.32	+/-0.02	0.63	+/-0.04	0.55	+/-0.04	0.51	+/-0.03	76.3	+/-7.0
				PHDpsi	74.7	+/-1.7	70.5	+/-2.5	1.7	+/-0.4	0.35	+/-0.02	0.65	+/-0.04	0.57	+/-0.04	0.50	+/-0.03	86.8	+/-5.6
				PROF_king	73.2	+/-1.7	70.4	+/-2.8	3.2	+/-0.8	0.32	+/-0.02	0.65	+/-0.04	0.56	+/-0.04	0.50	+/-0.03	73.7	+/-7.2
				PROFsec	77.1	+/-1.5	75.2	+/-2.3	1.8	+/-0.4	0.38	+/-0.03	0.69	+/-0.03	0.63	+/-0.04	0.54	+/-0.03	86.8	+/-5.6
				Prospect	73.2	+/-1.4	69.8	+/-2.5	2.4	+/-0.5	0.33	+/-0.03	0.62	+/-0.05	0.54	+/-0.04	0.49	+/-0.02	76.3	+/-7.0
				PSIpred	77.0	+/-1.7	73.4	+/-2.4	2.2	+/-0.5	0.40	+/-0.03	0.68	+/-0.04	0.62	+/-0.04	0.55	+/-0.03	84.2	+/-6.0
				SAM-T99sec	76.2	+/-1.5	71.2	+/-2.5	1.8	+/-0.4	0.38	+/-0.03	0.68	+/-0.04	0.61	+/-0.04	0.53	+/-0.03	84.2	+/-6.0
				SSpro2	75.4	+/-1.4	69.6	+/-2.0	2.4	+/-0.4	0.36	+/-0.03	0.68	+/-0.04	0.59	+/-0.04	0.53	+/-0.02	73.7	+/-7.2
common 1	38	dssp	2	PHD	70.9	+/-2.1	66.0	+/-2.6	3.7	+/-1.1	0.31	+/-0.03	0.60	+/-0.05	0.51	+/-0.05	0.46	+/-0.03	81.6	+/-6.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	66	dssp	1	JPred	72.6	+/-1.4	67.8	+/-2.4	1.8	+/-0.3	0.32	+/-0.02	0.63	+/-0.03	0.55	+/-0.04	0.51	+/-0.03	80.3	+/-4.9
				PHDpsi	74.0	+/-1.2	68.2	+/-2.1	1.9	+/-0.3	0.32	+/-0.02	0.65	+/-0.03	0.57	+/-0.04	0.50	+/-0.02	86.4	+/-4.3
				PROF_king	73.3	+/-1.3	68.4	+/-2.3	2.8	+/-0.5	0.32	+/-0.02	0.65	+/-0.03	0.56	+/-0.04	0.50	+/-0.02	78.8	+/-5.1
				PROFsec	76.7	+/-1.1	72.5	+/-2.1	1.7	+/-0.3	0.36	+/-0.02	0.69	+/-0.03	0.63	+/-0.03	0.54	+/-0.02	87.9	+/-4.0
				PSIpred	76.0	+/-1.4	70.6	+/-2.2	2.1	+/-0.4	0.37	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.55	+/-0.03	83.3	+/-4.6
				SAM-T99sec	74.9	+/-1.3	68.3	+/-2.2	1.8	+/-0.3	0.35	+/-0.02	0.68	+/-0.03	0.61	+/-0.03	0.53	+/-0.03	84.8	+/-4.4
				SSpro2	74.8	+/-1.2	68.2	+/-2.0	2.5	+/-0.3	0.34	+/-0.02	0.68	+/-0.03	0.59	+/-0.03	0.53	+/-0.02	75.8	+/-5.3
common 2	66	dssp	2	PHD	70.4	+/-1.4	64.0	+/-2.0	3.8	+/-0.7	0.27	+/-0.02	0.60	+/-0.04	0.51	+/-0.04	0.46	+/-0.02	78.8	+/-5.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	66	dssp	1	JPred	72.6	+/-1.4	67.8	+/-2.4	1.8	+/-0.3	0.32	+/-0.02	0.63	+/-0.03	0.55	+/-0.04	0.51	+/-0.03	80.3	+/-4.9
				PHDpsi	74.0	+/-1.2	68.2	+/-2.1	1.9	+/-0.3	0.32	+/-0.02	0.65	+/-0.03	0.57	+/-0.04	0.50	+/-0.02	86.4	+/-4.3
				PROF_king	73.3	+/-1.3	68.4	+/-2.3	2.8	+/-0.5	0.32	+/-0.02	0.65	+/-0.03	0.56	+/-0.04	0.50	+/-0.02	78.8	+/-5.1
				PROFsec	76.7	+/-1.1	72.5	+/-2.1	1.7	+/-0.3	0.36	+/-0.02	0.69	+/-0.03	0.63	+/-0.03	0.54	+/-0.02	87.9	+/-4.0
				PSIpred	76.0	+/-1.4	70.6	+/-2.2	2.1	+/-0.4	0.37	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.55	+/-0.03	83.3	+/-4.6
				SAM-T99sec	74.9	+/-1.3	68.3	+/-2.2	1.8	+/-0.3	0.35	+/-0.02	0.68	+/-0.03	0.61	+/-0.03	0.53	+/-0.03	84.8	+/-4.4
common 3	66	dssp	2	PHD	70.4	+/-1.4	64.0	+/-2.0	3.8	+/-0.7	0.27	+/-0.02	0.60	+/-0.04	0.51	+/-0.04	0.46	+/-0.02	78.8	+/-5.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	96	dssp	1	JPred	72.6	+/-1.2	68.4	+/-1.8	2.4	+/-0.4	0.32	+/-0.02	0.63	+/-0.03	0.55	+/-0.03	0.51	+/-0.02	81.2	+/-4.0
				PHDpsi	73.8	+/-1.2	68.9	+/-1.7	2.4	+/-0.5	0.33	+/-0.02	0.65	+/-0.03	0.57	+/-0.03	0.50	+/-0.02	83.3	+/-3.8
				PROFsec	76.1	+/-1.1	72.6	+/-1.7	2.2	+/-0.5	0.37	+/-0.02	0.69	+/-0.03	0.63	+/-0.03	0.54	+/-0.02	87.5	+/-3.4
				PSIpred	75.3	+/-1.3	71.3	+/-1.8	2.7	+/-0.4	0.36	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.55	+/-0.02	82.3	+/-3.9
				SAM-T99sec	75.0	+/-1.1	69.5	+/-1.7	2.2	+/-0.4	0.35	+/-0.02	0.68	+/-0.03	0.61	+/-0.03	0.53	+/-0.02	86.5	+/-3.5
common 4	96	dssp	2	PHD	70.0	+/-1.3	65.3	+/-1.8	4.6	+/-0.8	0.29	+/-0.02	0.60	+/-0.03	0.51	+/-0.03	0.46	+/-0.02	79.2	+/-4.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	111	dssp	1	PROFsec	75.2	+/-1.1	71.7	+/-1.6	2.4	+/-0.5	0.35	+/-0.02	0.69	+/-0.03	0.63	+/-0.02	0.54	+/-0.02	86.5	+/-3.3
				PSIpred	74.9	+/-1.2	71.0	+/-1.7	2.7	+/-0.4	0.36	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.55	+/-0.02	83.8	+/-3.5
				SAM-T99sec	74.3	+/-1.1	69.0	+/-1.6	2.4	+/-0.4	0.34	+/-0.02	0.68	+/-0.03	0.61	+/-0.03	0.53	+/-0.02	87.4	+/-3.2
common 5	111	dssp	2	PHDpsi	72.6	+/-1.1	68.0	+/-1.6	2.6	+/-0.5	0.32	+/-0.02	0.65	+/-0.03	0.57	+/-0.03	0.50	+/-0.02	83.8	+/-3.5
common 5	111	dssp	3	PHD	69.3	+/-1.3	64.8	+/-1.6	4.7	+/-0.7	0.28	+/-0.02	0.60	+/-0.03	0.51	+/-0.03	0.46	+/-0.02	80.2	+/-3.8

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	149	dssp	1	PROFsec	75.1	+/-1.0	71.8	+/-1.4	2.5	+/-0.4	0.36	+/-0.01	0.69	+/-0.02	0.63	+/-0.02	0.54	+/-0.02	85.2	+/-2.9
				PSIpred	75.1	+/-1.1	72.1	+/-1.4	2.7	+/-0.3	0.37	+/-0.02	0.68	+/-0.02	0.62	+/-0.02	0.55	+/-0.02	83.9	+/-3.0
common 6	149	dssp	2	PHDpsi	72.5	+/-1.0	68.0	+/-1.4	2.9	+/-0.4	0.32	+/-0.01	0.65	+/-0.02	0.57	+/-0.02	0.50	+/-0.02	81.2	+/-3.2
common 6	149	dssp	3	PHD	69.3	+/-1.1	65.5	+/-1.5	4.7	+/-0.6	0.28	+/-0.01	0.60	+/-0.03	0.51	+/-0.03	0.46	+/-0.02	77.9	+/-3.4