EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	341	66	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	282	58	method/apssp2.html
JPred	167	29	method/jpred.html
JUFO	48	14	method/jufo.html
PHD	273	53	method/phd.html
PHDpsi	271	53	method/phdpsi.html
PROF_king	277	61	method/prof_king.html
PROFsec	273	53	method/profsec.html
Prospect	209	51	method/prospect.html
PSIpred	287	62	method/psipred.html
SAM-T99sec	225	61	method/samt99_sec.html
SCRATCH (SSpro3)	70	16	method/scratch.html
SSpro2	257	48	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 31 proteins and 10 methods (HTML - ASCII)
- set 2: 55 proteins and 8 methods (HTML - ASCII)
- set 3: 55 proteins and 7 methods (HTML - ASCII)
- set 4: 80 proteins and 6 methods (HTML - ASCII)
- set 5: 152 proteins and 5 methods (HTML - ASCII)
- set 6: 238 proteins and 4 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	31	dssp	1	APSSP2	76.7	+/-1.5	71.4	+/-2.8	0.39	+/-0.03	90.3	+/-5.4
				JPred	73.3	+/-1.7	70.3	+/-2.9	0.33	+/-0.03	77.4	+/-7.6
				PHDpsi	75.1	+/-1.9	69.7	+/-2.9	0.36	+/-0.03	93.5	+/-4.5
				PROF_king	73.6	+/-1.9	69.8	+/-3.3	0.33	+/-0.03	80.6	+/-7.2
				PROFsec	77.4	+/-1.6	74.8	+/-2.7	0.39	+/-0.03	90.3	+/-5.4
				Prospect	73.6	+/-1.6	69.8	+/-2.9	0.33	+/-0.03	80.6	+/-7.2
				PSIpred	77.8	+/-1.9	73.6	+/-2.7	0.41	+/-0.03	87.1	+/-6.1
				SAM-T99sec	76.7	+/-1.7	71.1	+/-2.9	0.39	+/-0.03	87.1	+/-6.1
				SSpro2	75.7	+/-1.6	69.1	+/-2.2	0.37	+/-0.03	74.2	+/-8.0
common 1	31	dssp	2	PHD	70.4	+/-2.4	64.5	+/-3.1	0.31	+/-0.03	83.9	+/-6.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	55	dssp	1	JPred	72.0	+/-1.5	66.7	+/-2.7	0.31	+/-0.02	81.8	+/-5.2
				PHDpsi	73.9	+/-1.4	66.9	+/-2.4	0.32	+/-0.02	90.9	+/-3.9
				PROF_king	72.8	+/-1.4	66.5	+/-2.6	0.31	+/-0.02	83.6	+/-5.0
				PROFsec	76.4	+/-1.3	71.5	+/-2.4	0.36	+/-0.03	90.9	+/-3.9
				PSIpred	75.8	+/-1.6	69.8	+/-2.5	0.38	+/-0.03	85.5	+/-4.8
				SAM-T99sec	74.6	+/-1.5	67.1	+/-2.5	0.35	+/-0.03	87.3	+/-4.5
				SSpro2	74.6	+/-1.4	67.4	+/-2.3	0.35	+/-0.03	78.2	+/-5.6
common 2	55	dssp	2	PHD	70.1	+/-1.6	62.6	+/-2.3	0.27	+/-0.02	81.8	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	55	dssp	1	JPred	72.0	+/-1.5	66.7	+/-2.7	0.31	+/-0.02	81.8	+/-5.2
				PHDpsi	73.9	+/-1.4	66.9	+/-2.4	0.32	+/-0.02	90.9	+/-3.9
				PROF_king	72.8	+/-1.4	66.5	+/-2.6	0.31	+/-0.02	83.6	+/-5.0
				PROFsec	76.4	+/-1.3	71.5	+/-2.4	0.36	+/-0.03	90.9	+/-3.9
				PSIpred	75.8	+/-1.6	69.8	+/-2.5	0.38	+/-0.03	85.5	+/-4.8
				SAM-T99sec	74.6	+/-1.5	67.1	+/-2.5	0.35	+/-0.03	87.3	+/-4.5
common 3	55	dssp	2	PHD	70.1	+/-1.6	62.6	+/-2.3	0.27	+/-0.02	81.8	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	80	dssp	1	JPred	72.5	+/-1.2	67.5	+/-2.0	0.32	+/-0.02	82.5	+/-4.3
				PHDpsi	73.8	+/-1.2	67.7	+/-1.9	0.33	+/-0.02	86.2	+/-3.9
				PROFsec	76.1	+/-1.2	71.7	+/-1.9	0.37	+/-0.02	90.0	+/-3.4
				PSIpred	75.6	+/-1.4	71.1	+/-2.0	0.37	+/-0.02	83.8	+/-4.2
				SAM-T99sec	74.9	+/-1.2	68.9	+/-2.0	0.35	+/-0.02	88.8	+/-3.6
common 4	80	dssp	2	PHD	70.1	+/-1.5	64.5	+/-2.0	0.29	+/-0.02	81.2	+/-4.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	152	dssp	1	PROFsec	74.3	+/-0.9	70.2	+/-1.3	0.35	+/-0.01	85.5	+/-2.9
				PSIpred	74.7	+/-1.0	71.0	+/-1.5	0.36	+/-0.01	84.2	+/-3.0
				SAM-T99sec	74.3	+/-0.9	69.3	+/-1.3	0.34	+/-0.01	88.8	+/-2.6
common 5	152	dssp	2	PHDpsi	71.9	+/-1.0	66.5	+/-1.4	0.31	+/-0.01	82.9	+/-3.1
common 5	152	dssp	3	PHD	69.8	+/-1.1	64.7	+/-1.4	0.28	+/-0.01	80.3	+/-3.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	238	dssp	1	PROFsec	74.5	+/-0.8	71.2	+/-1.1	0.35	+/-0.01	84.0	+/-2.4
				PSIpred	75.2	+/-0.8	72.2	+/-1.1	0.37	+/-0.01	83.6	+/-2.4
common 6	238	dssp	2	PHDpsi	72.0	+/-0.8	67.5	+/-1.1	0.31	+/-0.01	81.1	+/-2.5
common 6	238	dssp	3	PHD	70.2	+/-0.8	65.8	+/-1.1	0.28	+/-0.01	79.0	+/-2.6