EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	330	64	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	281	57	method/apssp2.html
JPred	167	29	method/jpred.html
JUFO	41	12	method/jufo.html
PHD	262	51	method/phd.html
PHDpsi	260	51	method/phdpsi.html
PROF_king	267	59	method/prof_king.html
PROFsec	262	51	method/profsec.html
Prospect	199	49	method/prospect.html
PSIpred	284	61	method/psipred.html
SAM-T99sec	215	59	method/samt99_sec.html
SCRATCH (SSpro3)	59	14	method/scratch.html
SSpro2	257	48	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 31 proteins and 10 methods (HTML - ASCII)
- set 2: 55 proteins and 8 methods (HTML - ASCII)
- set 3: 55 proteins and 7 methods (HTML - ASCII)
- set 4: 80 proteins and 6 methods (HTML - ASCII)
- set 5: 149 proteins and 5 methods (HTML - ASCII)
- set 6: 235 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	31	dssp	1	APSSP2	76.7	+/-1.5	71.4	+/-2.8	2.2	+/-0.5	0.39	+/-0.03	0.67	+/-0.04	0.59	+/-0.05	0.55	+/-0.03	90.3	+/-5.4
				JPred	73.3	+/-1.7	70.3	+/-2.9	1.7	+/-0.5	0.33	+/-0.03	0.64	+/-0.04	0.56	+/-0.05	0.51	+/-0.03	77.4	+/-7.6
				PHDpsi	75.1	+/-1.9	69.7	+/-2.9	1.6	+/-0.4	0.36	+/-0.03	0.66	+/-0.04	0.56	+/-0.05	0.50	+/-0.03	93.5	+/-4.5
				PROF_king	73.6	+/-1.9	69.8	+/-3.3	3.4	+/-1.0	0.33	+/-0.03	0.66	+/-0.05	0.56	+/-0.05	0.51	+/-0.03	80.6	+/-7.2
				PROFsec	77.4	+/-1.6	74.8	+/-2.7	1.8	+/-0.4	0.39	+/-0.03	0.69	+/-0.04	0.61	+/-0.04	0.54	+/-0.03	90.3	+/-5.4
				Prospect	73.6	+/-1.6	69.8	+/-2.9	2.4	+/-0.5	0.33	+/-0.03	0.64	+/-0.05	0.55	+/-0.05	0.50	+/-0.03	80.6	+/-7.2
				PSIpred	77.8	+/-1.9	73.6	+/-2.7	2.1	+/-0.6	0.41	+/-0.03	0.69	+/-0.04	0.62	+/-0.05	0.56	+/-0.03	87.1	+/-6.1
				SAM-T99sec	76.7	+/-1.7	71.1	+/-2.9	1.7	+/-0.5	0.39	+/-0.03	0.69	+/-0.04	0.61	+/-0.05	0.54	+/-0.03	87.1	+/-6.1
				SSpro2	75.7	+/-1.6	69.1	+/-2.2	2.4	+/-0.4	0.37	+/-0.03	0.68	+/-0.04	0.58	+/-0.05	0.54	+/-0.03	74.2	+/-8.0
common 1	31	dssp	2	PHD	70.4	+/-2.4	64.5	+/-3.1	4.2	+/-1.4	0.31	+/-0.03	0.63	+/-0.06	0.53	+/-0.06	0.48	+/-0.03	83.9	+/-6.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	55	dssp	1	JPred	72.0	+/-1.5	66.7	+/-2.7	1.6	+/-0.3	0.31	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	81.8	+/-5.2
				PHDpsi	73.9	+/-1.4	66.9	+/-2.4	1.7	+/-0.4	0.32	+/-0.02	0.66	+/-0.04	0.56	+/-0.04	0.50	+/-0.03	90.9	+/-3.9
				PROF_king	72.8	+/-1.4	66.5	+/-2.6	2.8	+/-0.6	0.31	+/-0.02	0.66	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	83.6	+/-5.0
				PROFsec	76.4	+/-1.3	71.5	+/-2.4	1.6	+/-0.3	0.36	+/-0.03	0.69	+/-0.04	0.61	+/-0.04	0.54	+/-0.03	90.9	+/-3.9
				PSIpred	75.8	+/-1.6	69.8	+/-2.5	2.1	+/-0.4	0.38	+/-0.03	0.69	+/-0.04	0.62	+/-0.04	0.56	+/-0.03	85.5	+/-4.8
				SAM-T99sec	74.6	+/-1.5	67.1	+/-2.5	1.7	+/-0.3	0.35	+/-0.03	0.69	+/-0.04	0.61	+/-0.04	0.54	+/-0.03	87.3	+/-4.5
				SSpro2	74.6	+/-1.4	67.4	+/-2.3	2.5	+/-0.3	0.35	+/-0.03	0.68	+/-0.04	0.58	+/-0.04	0.54	+/-0.03	78.2	+/-5.6
common 2	55	dssp	2	PHD	70.1	+/-1.6	62.6	+/-2.3	3.9	+/-0.8	0.27	+/-0.02	0.63	+/-0.04	0.53	+/-0.04	0.48	+/-0.02	81.8	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	55	dssp	1	JPred	72.0	+/-1.5	66.7	+/-2.7	1.6	+/-0.3	0.31	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	81.8	+/-5.2
				PHDpsi	73.9	+/-1.4	66.9	+/-2.4	1.7	+/-0.4	0.32	+/-0.02	0.66	+/-0.04	0.56	+/-0.04	0.50	+/-0.03	90.9	+/-3.9
				PROF_king	72.8	+/-1.4	66.5	+/-2.6	2.8	+/-0.6	0.31	+/-0.02	0.66	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	83.6	+/-5.0
				PROFsec	76.4	+/-1.3	71.5	+/-2.4	1.6	+/-0.3	0.36	+/-0.03	0.69	+/-0.04	0.61	+/-0.04	0.54	+/-0.03	90.9	+/-3.9
				PSIpred	75.8	+/-1.6	69.8	+/-2.5	2.1	+/-0.4	0.38	+/-0.03	0.69	+/-0.04	0.62	+/-0.04	0.56	+/-0.03	85.5	+/-4.8
				SAM-T99sec	74.6	+/-1.5	67.1	+/-2.5	1.7	+/-0.3	0.35	+/-0.03	0.69	+/-0.04	0.61	+/-0.04	0.54	+/-0.03	87.3	+/-4.5
common 3	55	dssp	2	PHD	70.1	+/-1.6	62.6	+/-2.3	3.9	+/-0.8	0.27	+/-0.02	0.63	+/-0.04	0.53	+/-0.04	0.48	+/-0.02	81.8	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	80	dssp	1	JPred	72.5	+/-1.2	67.5	+/-2.0	2.3	+/-0.4	0.32	+/-0.02	0.64	+/-0.03	0.56	+/-0.03	0.51	+/-0.02	82.5	+/-4.3
				PHDpsi	73.8	+/-1.2	67.7	+/-1.9	2.3	+/-0.5	0.33	+/-0.02	0.66	+/-0.03	0.56	+/-0.03	0.50	+/-0.02	86.2	+/-3.9
				PROFsec	76.1	+/-1.2	71.7	+/-1.9	2.1	+/-0.5	0.37	+/-0.02	0.69	+/-0.03	0.61	+/-0.03	0.54	+/-0.02	90.0	+/-3.4
				PSIpred	75.6	+/-1.4	71.1	+/-2.0	2.5	+/-0.4	0.37	+/-0.02	0.69	+/-0.03	0.62	+/-0.03	0.56	+/-0.02	83.8	+/-4.2
				SAM-T99sec	74.9	+/-1.2	68.9	+/-2.0	2.1	+/-0.4	0.35	+/-0.02	0.69	+/-0.04	0.61	+/-0.03	0.54	+/-0.02	88.8	+/-3.6
common 4	80	dssp	2	PHD	70.1	+/-1.5	64.5	+/-2.0	4.7	+/-0.9	0.29	+/-0.02	0.63	+/-0.04	0.53	+/-0.03	0.48	+/-0.02	81.2	+/-4.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	149	dssp	1	PROFsec	74.1	+/-0.9	70.2	+/-1.4	2.8	+/-0.4	0.35	+/-0.01	0.69	+/-0.02	0.61	+/-0.02	0.54	+/-0.02	85.2	+/-2.9
				PSIpred	74.6	+/-1.1	71.1	+/-1.5	2.8	+/-0.4	0.37	+/-0.01	0.69	+/-0.02	0.62	+/-0.02	0.56	+/-0.02	83.9	+/-3.0
				SAM-T99sec	74.2	+/-0.9	69.4	+/-1.3	2.6	+/-0.4	0.34	+/-0.01	0.69	+/-0.02	0.61	+/-0.02	0.54	+/-0.02	88.6	+/-2.6
common 5	149	dssp	2	PHDpsi	71.8	+/-1.0	66.7	+/-1.4	2.8	+/-0.4	0.31	+/-0.01	0.66	+/-0.02	0.56	+/-0.02	0.50	+/-0.02	82.5	+/-3.1
common 5	149	dssp	3	PHD	69.7	+/-1.1	64.8	+/-1.4	4.3	+/-0.6	0.28	+/-0.01	0.63	+/-0.03	0.53	+/-0.02	0.48	+/-0.01	79.9	+/-3.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	235	dssp	1	PROFsec	74.4	+/-0.8	71.3	+/-1.1	2.7	+/-0.3	0.35	+/-0.01	0.69	+/-0.02	0.61	+/-0.02	0.54	+/-0.01	83.8	+/-2.4
				PSIpred	75.2	+/-0.8	72.2	+/-1.2	2.8	+/-0.3	0.37	+/-0.01	0.69	+/-0.02	0.62	+/-0.02	0.56	+/-0.01	83.4	+/-2.4
common 6	235	dssp	2	PHDpsi	72.0	+/-0.8	67.6	+/-1.1	3.0	+/-0.3	0.31	+/-0.01	0.66	+/-0.02	0.56	+/-0.02	0.50	+/-0.01	80.9	+/-2.6
common 6	235	dssp	3	PHD	70.1	+/-0.9	65.9	+/-1.1	4.0	+/-0.4	0.29	+/-0.01	0.63	+/-0.02	0.53	+/-0.02	0.48	+/-0.01	78.7	+/-2.7