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EVA summary for category sec (3)

Contents

About secondary structure prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 297 57 method/index.html
APSSP   00method/apssp.html
APSSP2   26654method/apssp2.html
JPred   16729method/jpred.html
PHD   22944method/phd.html
PHDpsi   22744method/phdpsi.html
PROF_king   23552method/prof_king.html
PROFsec   22944method/profsec.html
Prospect   17642method/prospect.html
PSIpred   26155method/psipred.html
SAM-T99sec   18252method/samt99_sec.html
SCRATCH (SSpro3)   267method/scratch.html
SSpro2   25748method/sspro2.html

 


Comparison of secondary structure prediction methods (detail level 3)

Averages compiled over different subsets

 


Set 1

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 131dssp1APSSP276.7+/-1.580.0+/-5.578.6+/-5.661.2+/-6.074.2+/-7.278.8+/-2.670.7+/-2.471.4+/-2.875.0+/-4.279.8+/-3.771.2+/-2.92.2+/-0.50.39+/-0.030.67+/-0.040.60+/-0.050.55+/-0.0390.3+/-5.46.2+/-1.16.0+/-1.1
JPred73.3+/-1.770.6+/-5.981.3+/-6.355.9+/-5.473.1+/-7.280.9+/-2.964.1+/-2.570.3+/-2.970.8+/-5.077.5+/-3.868.8+/-3.01.7+/-0.50.33+/-0.030.64+/-0.040.56+/-0.050.51+/-0.0377.4+/-7.67.4+/-1.77.4+/-1.4
PHDpsi75.1+/-1.977.4+/-6.378.5+/-6.161.9+/-6.469.1+/-6.876.4+/-2.869.5+/-2.869.7+/-2.971.9+/-4.976.9+/-4.666.6+/-2.91.6+/-0.40.36+/-0.030.66+/-0.040.56+/-0.050.50+/-0.0393.5+/-4.57.0+/-1.06.5+/-1.6
PROF_king73.6+/-1.972.3+/-6.483.3+/-7.167.7+/-6.862.9+/-6.576.6+/-2.868.0+/-2.569.8+/-3.367.9+/-5.677.9+/-4.768.8+/-3.23.4+/-1.00.33+/-0.030.66+/-0.050.56+/-0.050.51+/-0.0380.6+/-7.28.5+/-1.56.2+/-1.4
PROFsec77.4+/-1.678.8+/-6.481.6+/-6.569.8+/-6.669.4+/-6.875.7+/-2.772.5+/-2.474.8+/-2.775.0+/-5.082.3+/-3.669.9+/-2.91.8+/-0.40.39+/-0.030.69+/-0.040.61+/-0.040.54+/-0.0390.3+/-5.46.3+/-1.23.7+/-0.8
Prospect73.6+/-1.677.0+/-5.776.7+/-6.157.1+/-5.870.7+/-7.177.5+/-2.865.9+/-2.369.8+/-2.974.3+/-4.876.2+/-4.367.1+/-2.72.4+/-0.50.33+/-0.030.64+/-0.050.55+/-0.050.50+/-0.0380.6+/-7.26.2+/-0.97.6+/-1.4
PSIpred77.8+/-1.982.2+/-5.779.1+/-5.765.3+/-6.373.4+/-7.278.3+/-2.772.7+/-2.573.6+/-2.778.2+/-4.079.3+/-3.869.8+/-3.12.1+/-0.60.41+/-0.030.69+/-0.040.62+/-0.050.56+/-0.0387.1+/-6.15.1+/-1.25.6+/-1.1
SAM-T99sec76.7+/-1.784.5+/-5.576.8+/-5.463.7+/-6.174.9+/-7.275.2+/-3.371.6+/-2.371.1+/-2.976.9+/-3.778.4+/-4.068.4+/-3.31.7+/-0.50.39+/-0.030.69+/-0.040.61+/-0.040.53+/-0.0387.1+/-6.15.7+/-1.36.0+/-1.2
SSpro275.7+/-1.681.0+/-6.278.4+/-5.861.5+/-6.172.3+/-7.177.6+/-2.769.8+/-2.469.1+/-2.272.1+/-4.676.6+/-4.269.5+/-2.72.4+/-0.40.37+/-0.030.68+/-0.040.58+/-0.050.54+/-0.0374.2+/-8.06.5+/-1.16.5+/-1.4
common 131dssp2PHD70.4+/-2.475.6+/-7.376.4+/-6.559.9+/-6.365.4+/-6.772.6+/-3.167.1+/-3.064.5+/-3.164.8+/-5.673.7+/-4.562.4+/-3.14.2+/-1.40.31+/-0.030.63+/-0.060.53+/-0.060.48+/-0.0383.9+/-6.79.6+/-1.69.2+/-1.9

 


Set 2

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 255dssp1JPred72.0+/-1.570.6+/-5.181.3+/-5.755.9+/-4.673.1+/-5.881.5+/-2.065.7+/-2.066.7+/-2.762.8+/-4.674.7+/-3.565.4+/-2.61.6+/-0.30.31+/-0.020.64+/-0.040.56+/-0.040.51+/-0.0381.8+/-5.28.1+/-1.57.1+/-1.0
PHDpsi73.9+/-1.477.4+/-5.078.5+/-4.961.9+/-5.069.1+/-5.373.1+/-2.470.9+/-2.066.9+/-2.465.8+/-4.176.8+/-3.563.2+/-2.61.7+/-0.40.32+/-0.020.66+/-0.040.56+/-0.040.50+/-0.0390.9+/-3.97.2+/-0.85.8+/-1.0
PROF_king72.8+/-1.472.3+/-5.283.3+/-5.767.7+/-5.362.9+/-5.175.1+/-2.169.1+/-1.866.5+/-2.661.0+/-4.578.5+/-3.565.3+/-2.62.8+/-0.60.31+/-0.020.66+/-0.040.56+/-0.040.51+/-0.0383.6+/-5.07.9+/-1.07.1+/-1.1
PROFsec76.4+/-1.378.8+/-5.281.6+/-5.369.8+/-5.369.4+/-5.374.0+/-2.273.9+/-1.871.5+/-2.468.1+/-4.482.7+/-2.866.9+/-2.71.6+/-0.30.36+/-0.030.69+/-0.040.61+/-0.040.54+/-0.0390.9+/-3.96.8+/-0.94.2+/-0.7
PSIpred75.8+/-1.682.2+/-4.679.1+/-4.565.3+/-5.373.4+/-5.776.9+/-2.073.0+/-2.069.8+/-2.573.3+/-3.577.5+/-3.665.7+/-2.82.1+/-0.40.38+/-0.030.69+/-0.040.62+/-0.040.56+/-0.0385.5+/-4.86.2+/-1.05.8+/-0.8
SAM-T99sec74.6+/-1.584.5+/-4.776.8+/-4.363.7+/-5.074.9+/-5.672.3+/-2.772.0+/-1.967.1+/-2.570.0+/-3.677.2+/-3.363.8+/-2.71.7+/-0.30.35+/-0.030.69+/-0.040.61+/-0.040.53+/-0.0387.3+/-4.56.6+/-1.05.7+/-0.8
SSpro274.6+/-1.481.0+/-4.978.4+/-4.661.5+/-4.972.3+/-5.575.7+/-2.171.5+/-1.967.4+/-2.367.7+/-4.177.4+/-3.466.1+/-2.52.5+/-0.30.35+/-0.030.68+/-0.040.58+/-0.040.54+/-0.0378.2+/-5.66.6+/-0.86.3+/-0.9
common 255dssp2PHD70.1+/-1.675.6+/-5.776.4+/-5.259.9+/-4.965.4+/-5.069.9+/-2.569.0+/-2.162.6+/-2.359.1+/-4.574.8+/-3.459.6+/-2.53.9+/-0.80.27+/-0.020.63+/-0.040.53+/-0.040.48+/-0.0281.8+/-5.29.5+/-1.18.2+/-1.3

 


Set 3

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 355dssp1JPred72.0+/-1.570.6+/-5.181.3+/-5.755.9+/-4.673.1+/-5.881.5+/-2.065.7+/-2.066.7+/-2.762.8+/-4.674.7+/-3.565.4+/-2.61.6+/-0.30.31+/-0.020.64+/-0.040.56+/-0.040.51+/-0.0381.8+/-5.28.1+/-1.57.1+/-1.0
PHDpsi73.9+/-1.477.4+/-5.078.5+/-4.961.9+/-5.069.1+/-5.373.1+/-2.470.9+/-2.066.9+/-2.465.8+/-4.176.8+/-3.563.2+/-2.61.7+/-0.40.32+/-0.020.66+/-0.040.56+/-0.040.50+/-0.0390.9+/-3.97.2+/-0.85.8+/-1.0
PROF_king72.8+/-1.472.3+/-5.283.3+/-5.767.7+/-5.362.9+/-5.175.1+/-2.169.1+/-1.866.5+/-2.661.0+/-4.578.5+/-3.565.3+/-2.62.8+/-0.60.31+/-0.020.66+/-0.040.56+/-0.040.51+/-0.0383.6+/-5.07.9+/-1.07.1+/-1.1
PROFsec76.4+/-1.378.8+/-5.281.6+/-5.369.8+/-5.369.4+/-5.374.0+/-2.273.9+/-1.871.5+/-2.468.1+/-4.482.7+/-2.866.9+/-2.71.6+/-0.30.36+/-0.030.69+/-0.040.61+/-0.040.54+/-0.0390.9+/-3.96.8+/-0.94.2+/-0.7
PSIpred75.8+/-1.682.2+/-4.679.1+/-4.565.3+/-5.373.4+/-5.776.9+/-2.073.0+/-2.069.8+/-2.573.3+/-3.577.5+/-3.665.7+/-2.82.1+/-0.40.38+/-0.030.69+/-0.040.62+/-0.040.56+/-0.0385.5+/-4.86.2+/-1.05.8+/-0.8
SAM-T99sec74.6+/-1.584.5+/-4.776.8+/-4.363.7+/-5.074.9+/-5.672.3+/-2.772.0+/-1.967.1+/-2.570.0+/-3.677.2+/-3.363.8+/-2.71.7+/-0.30.35+/-0.030.69+/-0.040.61+/-0.040.53+/-0.0387.3+/-4.56.6+/-1.05.7+/-0.8
common 355dssp2PHD70.1+/-1.675.6+/-5.776.4+/-5.259.9+/-4.965.4+/-5.069.9+/-2.569.0+/-2.162.6+/-2.359.1+/-4.574.8+/-3.459.6+/-2.53.9+/-0.80.27+/-0.020.63+/-0.040.53+/-0.040.48+/-0.0281.8+/-5.29.5+/-1.18.2+/-1.3

 


Set 4

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 480dssp1JPred72.5+/-1.270.6+/-4.281.3+/-4.755.9+/-3.673.1+/-4.682.3+/-1.666.3+/-1.667.5+/-2.062.2+/-3.873.3+/-2.867.5+/-2.02.3+/-0.40.32+/-0.020.64+/-0.030.56+/-0.030.51+/-0.0282.5+/-4.38.6+/-1.27.3+/-0.8
PHDpsi73.8+/-1.277.4+/-4.378.5+/-4.261.9+/-4.069.1+/-4.373.9+/-2.071.6+/-1.667.7+/-1.964.5+/-3.775.9+/-2.864.0+/-2.02.3+/-0.50.33+/-0.020.66+/-0.030.56+/-0.030.50+/-0.0286.2+/-3.97.7+/-0.86.8+/-0.9
PROFsec76.1+/-1.278.8+/-4.481.6+/-4.469.8+/-4.369.4+/-4.274.2+/-1.873.8+/-1.571.7+/-1.967.5+/-3.981.6+/-2.466.2+/-2.12.1+/-0.50.37+/-0.020.69+/-0.030.61+/-0.030.54+/-0.0290.0+/-3.46.9+/-0.85.7+/-0.8
PSIpred75.6+/-1.482.2+/-3.879.1+/-3.865.3+/-4.173.4+/-4.675.9+/-1.773.4+/-1.671.1+/-2.073.2+/-3.277.2+/-2.867.3+/-2.12.5+/-0.40.37+/-0.020.69+/-0.030.62+/-0.030.56+/-0.0283.8+/-4.26.6+/-0.95.6+/-0.7
SAM-T99sec74.9+/-1.284.5+/-3.976.8+/-3.663.7+/-4.074.9+/-4.572.0+/-2.271.5+/-1.868.9+/-2.070.2+/-3.376.6+/-2.763.6+/-2.32.1+/-0.40.35+/-0.020.69+/-0.040.61+/-0.030.53+/-0.0288.8+/-3.66.3+/-0.75.9+/-0.7
common 480dssp2PHD70.1+/-1.575.6+/-4.676.4+/-4.459.9+/-4.065.4+/-4.171.1+/-2.070.1+/-1.764.5+/-2.059.7+/-3.973.5+/-2.862.1+/-2.04.7+/-0.90.29+/-0.020.63+/-0.040.53+/-0.030.48+/-0.0281.2+/-4.49.5+/-1.18.0+/-1.1

 


Set 5

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 5126dssp1PROFsec74.8+/-1.078.8+/-3.681.6+/-3.669.8+/-3.469.4+/-3.473.6+/-1.474.2+/-1.170.8+/-1.570.5+/-3.077.9+/-2.165.8+/-1.62.4+/-0.40.35+/-0.020.69+/-0.030.61+/-0.020.54+/-0.0286.5+/-3.16.3+/-0.77.0+/-0.8
PSIpred74.9+/-1.282.2+/-3.279.1+/-3.365.3+/-3.273.4+/-3.675.3+/-1.474.4+/-1.271.0+/-1.775.7+/-2.576.0+/-2.267.8+/-1.82.6+/-0.40.37+/-0.020.69+/-0.020.62+/-0.020.56+/-0.0284.9+/-3.26.9+/-0.86.3+/-0.6
SAM-T99sec74.5+/-1.084.5+/-3.376.8+/-3.163.7+/-3.174.9+/-3.671.7+/-1.773.5+/-1.369.4+/-1.572.6+/-2.574.8+/-2.264.9+/-1.72.6+/-0.40.34+/-0.020.69+/-0.030.61+/-0.020.53+/-0.0289.7+/-2.76.8+/-0.76.4+/-0.7
common 5126dssp2PHDpsi72.6+/-1.177.4+/-3.578.5+/-3.561.9+/-3.169.1+/-3.472.6+/-1.571.6+/-1.267.3+/-1.568.3+/-2.973.0+/-2.363.5+/-1.52.7+/-0.40.32+/-0.020.66+/-0.020.56+/-0.030.50+/-0.0283.3+/-3.37.8+/-0.78.1+/-0.9
common 5126dssp3PHD70.1+/-1.275.6+/-3.676.4+/-3.559.9+/-3.165.4+/-3.370.8+/-1.570.7+/-1.365.1+/-1.665.1+/-3.071.3+/-2.362.5+/-1.54.4+/-0.70.29+/-0.010.63+/-0.030.53+/-0.030.48+/-0.0280.2+/-3.69.0+/-0.98.7+/-1.0

 


Set 6

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 6212dssp1PROFsec74.9+/-0.878.8+/-2.681.6+/-2.669.8+/-2.769.4+/-2.773.6+/-1.073.3+/-0.871.7+/-1.170.6+/-2.275.7+/-1.766.5+/-1.12.5+/-0.30.35+/-0.010.69+/-0.020.61+/-0.020.54+/-0.0184.4+/-2.56.4+/-0.56.4+/-0.6
PSIpred75.4+/-0.982.2+/-2.379.1+/-2.365.3+/-2.573.4+/-2.875.1+/-1.074.0+/-0.972.3+/-1.275.4+/-1.974.9+/-1.868.6+/-1.32.7+/-0.30.37+/-0.010.69+/-0.020.62+/-0.020.56+/-0.0184.0+/-2.56.6+/-0.66.0+/-0.5
common 6212dssp2PHDpsi72.4+/-0.977.4+/-2.578.5+/-2.561.9+/-2.569.1+/-2.772.3+/-1.170.5+/-0.968.0+/-1.267.9+/-2.271.3+/-1.963.9+/-1.12.9+/-0.30.32+/-0.010.66+/-0.020.56+/-0.020.50+/-0.0181.1+/-2.77.7+/-0.57.3+/-0.7
common 6212dssp3PHD70.4+/-0.975.6+/-2.676.4+/-2.559.9+/-2.465.4+/-2.670.5+/-1.169.7+/-0.966.2+/-1.265.7+/-2.269.7+/-1.962.7+/-1.14.1+/-0.50.29+/-0.010.63+/-0.020.53+/-0.020.48+/-0.0178.8+/-2.88.4+/-0.67.8+/-0.7

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