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EVA summary for category sec (3)

Contents

About secondary structure prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 246 44 method/index.html
APSSP   00method/apssp.html
APSSP2   21641method/apssp2.html
JPred   16729method/jpred.html
PHD   17931method/phd.html
PHDpsi   17731method/phdpsi.html
PROF_king   18839method/prof_king.html
PROFsec   17931method/profsec.html
Prospect   13931method/prospect.html
PSIpred   21742method/psipred.html
SAM-T99sec   15840method/samt99_sec.html
SSpro2   24144method/sspro2.html

 


Comparison of secondary structure prediction methods (detail level 3)

Averages compiled over different subsets

 


Set 1

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 131dssp1APSSP276.7+/-1.579.3+/-5.477.6+/-5.559.1+/-5.973.6+/-7.278.8+/-2.670.7+/-2.471.4+/-2.875.0+/-4.279.8+/-3.771.2+/-2.92.2+/-0.50.39+/-0.030.66+/-0.040.58+/-0.050.53+/-0.0390.3+/-5.46.2+/-1.16.0+/-1.1
JPred73.3+/-1.770.6+/-5.981.3+/-6.355.9+/-5.473.1+/-7.280.9+/-2.964.1+/-2.570.3+/-2.970.8+/-5.077.5+/-3.868.8+/-3.01.7+/-0.50.33+/-0.030.64+/-0.040.56+/-0.050.51+/-0.0377.4+/-7.67.4+/-1.77.4+/-1.4
PHDpsi75.1+/-1.976.5+/-6.277.5+/-6.161.6+/-6.469.7+/-6.976.4+/-2.869.5+/-2.869.7+/-2.971.9+/-4.976.9+/-4.666.6+/-2.91.6+/-0.40.36+/-0.030.64+/-0.040.56+/-0.050.50+/-0.0393.5+/-4.57.0+/-1.06.5+/-1.6
PROF_king73.6+/-1.972.4+/-6.482.3+/-7.067.1+/-6.763.3+/-6.576.6+/-2.868.0+/-2.569.8+/-3.367.9+/-5.677.9+/-4.768.8+/-3.23.4+/-1.00.33+/-0.030.66+/-0.050.56+/-0.050.51+/-0.0380.6+/-7.28.5+/-1.56.2+/-1.4
PROFsec77.4+/-1.678.2+/-6.480.7+/-6.469.4+/-6.670.8+/-6.975.7+/-2.672.5+/-2.474.8+/-2.775.0+/-5.082.3+/-3.669.9+/-2.91.8+/-0.40.39+/-0.030.68+/-0.040.62+/-0.040.54+/-0.0390.3+/-5.46.3+/-1.23.7+/-0.8
Prospect73.6+/-1.676.6+/-5.776.1+/-6.156.6+/-5.871.3+/-7.177.5+/-2.865.9+/-2.369.8+/-2.974.3+/-4.876.2+/-4.367.1+/-2.72.4+/-0.50.33+/-0.030.63+/-0.050.55+/-0.050.50+/-0.0380.6+/-7.26.2+/-0.97.6+/-1.4
PSIpred77.8+/-1.981.6+/-5.678.5+/-5.764.9+/-6.374.0+/-7.378.3+/-2.772.7+/-2.573.6+/-2.778.2+/-4.079.3+/-3.869.8+/-3.12.1+/-0.60.41+/-0.030.68+/-0.040.62+/-0.050.55+/-0.0387.1+/-6.15.1+/-1.25.6+/-1.1
SAM-T99sec76.7+/-1.783.9+/-5.476.3+/-5.462.6+/-6.175.1+/-7.275.2+/-3.371.6+/-2.371.1+/-2.976.9+/-3.778.4+/-4.068.4+/-3.31.7+/-0.50.39+/-0.030.68+/-0.040.61+/-0.050.53+/-0.0387.1+/-6.15.7+/-1.36.0+/-1.2
SSpro275.7+/-1.680.9+/-6.278.1+/-5.761.5+/-6.172.6+/-7.177.6+/-2.769.8+/-2.469.1+/-2.272.1+/-4.676.6+/-4.269.5+/-2.72.4+/-0.40.37+/-0.030.68+/-0.040.59+/-0.050.53+/-0.0374.2+/-8.06.5+/-1.16.5+/-1.4
common 131dssp2PHD70.4+/-2.474.1+/-7.275.0+/-6.559.2+/-6.365.1+/-6.772.6+/-3.167.1+/-3.064.5+/-3.164.8+/-5.673.7+/-4.562.4+/-3.14.2+/-1.40.31+/-0.030.61+/-0.060.52+/-0.060.47+/-0.0383.9+/-6.79.6+/-1.69.2+/-1.9

 


Set 2

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 255dssp1JPred72.0+/-1.570.6+/-5.181.3+/-5.755.9+/-4.673.1+/-5.881.5+/-2.065.7+/-2.066.7+/-2.762.8+/-4.674.7+/-3.565.4+/-2.61.6+/-0.30.31+/-0.020.64+/-0.040.56+/-0.040.51+/-0.0381.8+/-5.28.1+/-1.57.1+/-1.0
PHDpsi73.9+/-1.476.5+/-4.977.5+/-4.861.6+/-5.069.7+/-5.373.1+/-2.470.9+/-2.066.9+/-2.465.8+/-4.176.8+/-3.563.2+/-2.61.7+/-0.40.32+/-0.020.64+/-0.040.56+/-0.040.50+/-0.0390.9+/-3.97.2+/-0.85.8+/-1.0
PROF_king72.8+/-1.472.4+/-5.282.3+/-5.767.1+/-5.363.3+/-5.175.1+/-2.169.1+/-1.866.5+/-2.661.0+/-4.578.5+/-3.565.3+/-2.62.8+/-0.60.31+/-0.020.66+/-0.040.56+/-0.040.51+/-0.0383.6+/-5.07.9+/-1.07.1+/-1.1
PROFsec76.4+/-1.378.2+/-5.280.7+/-5.369.4+/-5.270.8+/-5.474.0+/-2.273.9+/-1.871.5+/-2.468.1+/-4.482.7+/-2.866.9+/-2.71.6+/-0.30.36+/-0.030.68+/-0.040.62+/-0.030.54+/-0.0390.9+/-3.96.8+/-0.94.2+/-0.7
PSIpred75.8+/-1.681.6+/-4.678.5+/-4.464.9+/-5.274.0+/-5.876.9+/-2.073.0+/-2.069.8+/-2.573.3+/-3.577.5+/-3.665.7+/-2.82.1+/-0.40.38+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0385.5+/-4.86.2+/-1.05.8+/-0.8
SAM-T99sec74.6+/-1.583.9+/-4.776.3+/-4.362.6+/-4.975.1+/-5.672.3+/-2.772.0+/-1.967.1+/-2.570.0+/-3.677.2+/-3.363.8+/-2.71.7+/-0.30.35+/-0.030.68+/-0.040.61+/-0.040.53+/-0.0387.3+/-4.56.6+/-1.05.7+/-0.8
SSpro274.6+/-1.480.9+/-4.978.1+/-4.661.5+/-4.972.6+/-5.575.7+/-2.171.5+/-1.967.4+/-2.367.7+/-4.177.4+/-3.466.1+/-2.52.5+/-0.30.35+/-0.030.68+/-0.040.59+/-0.040.53+/-0.0378.2+/-5.66.6+/-0.86.3+/-0.9
common 255dssp2PHD70.1+/-1.674.1+/-5.675.0+/-5.259.2+/-4.965.1+/-5.069.9+/-2.569.0+/-2.162.6+/-2.359.1+/-4.574.8+/-3.459.6+/-2.53.9+/-0.80.27+/-0.020.61+/-0.040.52+/-0.040.47+/-0.0281.8+/-5.29.5+/-1.18.2+/-1.3

 


Set 3

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 355dssp1JPred72.0+/-1.570.6+/-5.181.3+/-5.755.9+/-4.673.1+/-5.881.5+/-2.065.7+/-2.066.7+/-2.762.8+/-4.674.7+/-3.565.4+/-2.61.6+/-0.30.31+/-0.020.64+/-0.040.56+/-0.040.51+/-0.0381.8+/-5.28.1+/-1.57.1+/-1.0
PHDpsi73.9+/-1.476.5+/-4.977.5+/-4.861.6+/-5.069.7+/-5.373.1+/-2.470.9+/-2.066.9+/-2.465.8+/-4.176.8+/-3.563.2+/-2.61.7+/-0.40.32+/-0.020.64+/-0.040.56+/-0.040.50+/-0.0390.9+/-3.97.2+/-0.85.8+/-1.0
PROF_king72.8+/-1.472.4+/-5.282.3+/-5.767.1+/-5.363.3+/-5.175.1+/-2.169.1+/-1.866.5+/-2.661.0+/-4.578.5+/-3.565.3+/-2.62.8+/-0.60.31+/-0.020.66+/-0.040.56+/-0.040.51+/-0.0383.6+/-5.07.9+/-1.07.1+/-1.1
PROFsec76.4+/-1.378.2+/-5.280.7+/-5.369.4+/-5.270.8+/-5.474.0+/-2.273.9+/-1.871.5+/-2.468.1+/-4.482.7+/-2.866.9+/-2.71.6+/-0.30.36+/-0.030.68+/-0.040.62+/-0.030.54+/-0.0390.9+/-3.96.8+/-0.94.2+/-0.7
PSIpred75.8+/-1.681.6+/-4.678.5+/-4.464.9+/-5.274.0+/-5.876.9+/-2.073.0+/-2.069.8+/-2.573.3+/-3.577.5+/-3.665.7+/-2.82.1+/-0.40.38+/-0.030.68+/-0.040.62+/-0.040.55+/-0.0385.5+/-4.86.2+/-1.05.8+/-0.8
SAM-T99sec74.6+/-1.583.9+/-4.776.3+/-4.362.6+/-4.975.1+/-5.672.3+/-2.772.0+/-1.967.1+/-2.570.0+/-3.677.2+/-3.363.8+/-2.71.7+/-0.30.35+/-0.030.68+/-0.040.61+/-0.040.53+/-0.0387.3+/-4.56.6+/-1.05.7+/-0.8
common 355dssp2PHD70.1+/-1.674.1+/-5.675.0+/-5.259.2+/-4.965.1+/-5.069.9+/-2.569.0+/-2.162.6+/-2.359.1+/-4.574.8+/-3.459.6+/-2.53.9+/-0.80.27+/-0.020.61+/-0.040.52+/-0.040.47+/-0.0281.8+/-5.29.5+/-1.18.2+/-1.3

 


Set 4

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 480dssp1JPred72.5+/-1.270.6+/-4.281.3+/-4.755.9+/-3.673.1+/-4.682.3+/-1.666.3+/-1.667.5+/-2.062.2+/-3.873.3+/-2.867.5+/-2.02.3+/-0.40.32+/-0.020.64+/-0.030.56+/-0.030.51+/-0.0282.5+/-4.38.6+/-1.27.3+/-0.8
PHDpsi73.8+/-1.276.5+/-4.277.5+/-4.261.6+/-4.069.7+/-4.373.9+/-2.071.6+/-1.667.7+/-1.964.5+/-3.775.9+/-2.864.0+/-2.02.3+/-0.50.33+/-0.020.64+/-0.030.56+/-0.030.50+/-0.0286.2+/-3.97.7+/-0.86.8+/-0.9
PROFsec76.1+/-1.278.2+/-4.480.7+/-4.469.4+/-4.370.8+/-4.374.2+/-1.873.8+/-1.571.7+/-1.967.5+/-3.981.6+/-2.466.2+/-2.12.1+/-0.50.37+/-0.020.68+/-0.030.62+/-0.030.54+/-0.0290.0+/-3.46.9+/-0.85.7+/-0.8
PSIpred75.6+/-1.481.6+/-3.778.5+/-3.864.9+/-4.174.0+/-4.675.9+/-1.773.4+/-1.671.1+/-2.073.2+/-3.277.2+/-2.867.3+/-2.12.5+/-0.40.37+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0283.8+/-4.26.6+/-0.95.6+/-0.7
SAM-T99sec74.9+/-1.283.9+/-3.976.3+/-3.662.6+/-4.075.1+/-4.572.0+/-2.271.5+/-1.868.9+/-2.070.2+/-3.376.6+/-2.763.6+/-2.32.1+/-0.40.35+/-0.020.68+/-0.040.61+/-0.030.53+/-0.0288.8+/-3.66.3+/-0.75.9+/-0.7
common 480dssp2PHD70.1+/-1.574.1+/-4.675.0+/-4.359.2+/-3.965.1+/-4.171.1+/-2.070.1+/-1.764.5+/-2.059.7+/-3.973.5+/-2.862.1+/-2.04.7+/-0.90.29+/-0.020.61+/-0.040.52+/-0.030.47+/-0.0281.2+/-4.49.5+/-1.18.0+/-1.1

 


Set 5

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 5105dssp1PROFsec75.1+/-1.178.2+/-4.080.7+/-4.069.4+/-3.770.8+/-3.874.5+/-1.573.6+/-1.370.7+/-1.668.9+/-3.378.0+/-2.366.3+/-1.82.5+/-0.50.35+/-0.020.68+/-0.030.62+/-0.030.54+/-0.0287.6+/-3.27.1+/-0.86.2+/-0.7
PSIpred75.5+/-1.281.6+/-3.578.5+/-3.564.9+/-3.674.0+/-4.076.2+/-1.574.1+/-1.471.4+/-1.875.1+/-2.775.4+/-2.568.7+/-1.92.5+/-0.40.37+/-0.020.68+/-0.030.62+/-0.030.55+/-0.0283.8+/-3.66.6+/-0.85.9+/-0.6
SAM-T99sec74.6+/-1.183.9+/-3.676.3+/-3.462.6+/-3.575.1+/-4.072.2+/-1.872.4+/-1.568.9+/-1.671.3+/-2.874.2+/-2.564.4+/-1.92.5+/-0.40.34+/-0.020.68+/-0.030.61+/-0.030.53+/-0.0289.5+/-3.06.5+/-0.76.2+/-0.7
common 5105dssp2PHDpsi72.8+/-1.176.5+/-3.977.5+/-3.861.6+/-3.569.7+/-3.773.7+/-1.670.9+/-1.467.1+/-1.766.3+/-3.272.6+/-2.663.6+/-1.72.7+/-0.50.32+/-0.020.64+/-0.030.56+/-0.030.50+/-0.0285.7+/-3.48.2+/-0.87.4+/-0.8
common 5105dssp3PHD69.8+/-1.374.1+/-4.075.0+/-3.959.2+/-3.465.1+/-3.571.5+/-1.670.0+/-1.464.7+/-1.762.7+/-3.370.7+/-2.662.6+/-1.74.7+/-0.80.28+/-0.020.61+/-0.030.52+/-0.030.47+/-0.0281.9+/-3.89.6+/-1.08.1+/-0.9

 


Set 6

Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot sots rank method Q3 ERRsigQ3 Q3H%o ERRsigQ3H%o Q3H%p ERRsigQ3H%p Q3E%o ERRsigQ3E%o Q3E%p ERRsigQ3E%p Q3L%o ERRsigQ3L%o Q3L%p ERRsigQ3L%p sov ERRsigsov sovH ERRsigsovH sovE ERRsigsovE sovL ERRsigsovL BAD ERRsigBAD info ERRsiginfo corrH ERRsigcorrH corrE ERRsigcorrE corrL ERRsigcorrL class ERRsigclass contDH ERRsigcontDH contDE ERRsigcontDE
common 6168dssp1PROFsec74.9+/-0.978.2+/-2.980.7+/-2.969.4+/-2.970.8+/-3.074.2+/-1.272.7+/-1.071.5+/-1.369.0+/-2.576.3+/-1.966.8+/-1.32.7+/-0.40.35+/-0.010.68+/-0.020.62+/-0.020.54+/-0.0186.3+/-2.77.0+/-0.66.1+/-0.6
PSIpred75.4+/-1.081.6+/-2.678.5+/-2.664.9+/-2.874.0+/-3.275.6+/-1.173.5+/-1.072.5+/-1.374.3+/-2.275.2+/-2.069.4+/-1.42.7+/-0.30.37+/-0.010.68+/-0.020.62+/-0.020.55+/-0.0283.9+/-2.86.5+/-0.65.9+/-0.5
common 6168dssp2PHDpsi72.3+/-1.076.5+/-2.977.5+/-2.861.6+/-2.869.7+/-3.073.1+/-1.269.9+/-1.167.8+/-1.465.6+/-2.571.6+/-2.164.5+/-1.33.0+/-0.40.32+/-0.010.64+/-0.020.56+/-0.020.50+/-0.0182.7+/-2.98.1+/-0.67.2+/-0.7
common 6168dssp3PHD69.7+/-1.074.1+/-2.975.0+/-2.859.2+/-2.765.1+/-2.970.9+/-1.268.9+/-1.165.6+/-1.463.0+/-2.569.5+/-2.163.1+/-1.34.5+/-0.50.28+/-0.010.61+/-0.020.52+/-0.020.47+/-0.0179.2+/-3.18.9+/-0.77.8+/-0.7

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