EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	233	39	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	203	36	method/apssp2.html
JPred	167	29	method/jpred.html
PHD	166	26	method/phd.html
PHDpsi	165	26	method/phdpsi.html
PROF_king	175	34	method/prof_king.html
PROFsec	166	26	method/profsec.html
Prospect	128	27	method/prospect.html
PSIpred	208	38	method/psipred.html
PSSP	1	1	method/pssp.html
SAM-T99sec	152	37	method/samt99_sec.html
SSpro1	1	1	method/sspro1.html
SSpro2	228	39	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 32 proteins and 10 methods (HTML - ASCII)
- set 2: 56 proteins and 8 methods (HTML - ASCII)
- set 3: 56 proteins and 7 methods (HTML - ASCII)
- set 4: 81 proteins and 6 methods (HTML - ASCII)
- set 5: 100 proteins and 5 methods (HTML - ASCII)
- set 6: 161 proteins and 4 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	32	dssp	1	APSSP2	76.1	+/-1.6	70.6	+/-2.8	0.38	+/-0.03	90.6	+/-5.2
				JPred	73.6	+/-1.7	70.6	+/-2.8	0.33	+/-0.03	78.1	+/-7.4
				PHDpsi	75.3	+/-1.9	70.2	+/-2.9	0.36	+/-0.03	90.6	+/-5.2
				PROF_king	73.8	+/-1.9	70.3	+/-3.2	0.34	+/-0.03	78.1	+/-7.4
				PROFsec	77.5	+/-1.6	75.3	+/-2.6	0.39	+/-0.03	87.5	+/-5.9
				Prospect	73.5	+/-1.5	69.6	+/-2.8	0.33	+/-0.03	78.1	+/-7.4
				PSIpred	77.6	+/-1.8	73.3	+/-2.7	0.41	+/-0.03	84.4	+/-6.5
				SAM-T99sec	76.8	+/-1.6	71.2	+/-2.8	0.39	+/-0.03	84.4	+/-6.5
				SSpro2	75.8	+/-1.5	69.6	+/-2.2	0.37	+/-0.03	71.9	+/-8.1
common 1	32	dssp	2	PHD	70.6	+/-2.4	64.8	+/-3.0	0.31	+/-0.03	84.4	+/-6.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	56	dssp	1	JPred	72.3	+/-1.5	66.9	+/-2.6	0.31	+/-0.02	82.1	+/-5.2
				PHDpsi	74.1	+/-1.4	67.2	+/-2.4	0.32	+/-0.02	89.3	+/-4.2
				PROF_king	72.9	+/-1.4	66.9	+/-2.6	0.31	+/-0.02	82.1	+/-5.2
				PROFsec	76.5	+/-1.3	71.8	+/-2.4	0.36	+/-0.03	89.3	+/-4.2
				PSIpred	75.7	+/-1.6	69.7	+/-2.5	0.38	+/-0.03	83.9	+/-5.0
				SAM-T99sec	74.7	+/-1.5	67.2	+/-2.5	0.35	+/-0.03	85.7	+/-4.7
				SSpro2	74.7	+/-1.4	67.7	+/-2.3	0.35	+/-0.02	76.8	+/-5.7
common 2	56	dssp	2	PHD	70.2	+/-1.6	62.8	+/-2.3	0.28	+/-0.02	82.1	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	56	dssp	1	JPred	72.3	+/-1.5	66.9	+/-2.6	0.31	+/-0.02	82.1	+/-5.2
				PHDpsi	74.1	+/-1.4	67.2	+/-2.4	0.32	+/-0.02	89.3	+/-4.2
				PROF_king	72.9	+/-1.4	66.9	+/-2.6	0.31	+/-0.02	82.1	+/-5.2
				PROFsec	76.5	+/-1.3	71.8	+/-2.4	0.36	+/-0.03	89.3	+/-4.2
				PSIpred	75.7	+/-1.6	69.7	+/-2.5	0.38	+/-0.03	83.9	+/-5.0
				SAM-T99sec	74.7	+/-1.5	67.2	+/-2.5	0.35	+/-0.03	85.7	+/-4.7
common 3	56	dssp	2	PHD	70.2	+/-1.6	62.8	+/-2.3	0.28	+/-0.02	82.1	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	81	dssp	1	JPred	72.6	+/-1.2	67.6	+/-1.9	0.32	+/-0.02	82.7	+/-4.2
				PHDpsi	73.9	+/-1.2	67.9	+/-1.9	0.33	+/-0.02	85.2	+/-4.0
				PROFsec	76.2	+/-1.2	71.9	+/-1.9	0.37	+/-0.02	88.9	+/-3.5
				PSIpred	75.5	+/-1.4	71.0	+/-2.0	0.37	+/-0.02	82.7	+/-4.2
				SAM-T99sec	75.0	+/-1.2	69.0	+/-1.9	0.35	+/-0.02	87.7	+/-3.7
common 4	81	dssp	2	PHD	70.1	+/-1.5	64.6	+/-1.9	0.29	+/-0.02	81.5	+/-4.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	100	dssp	1	PROFsec	75.2	+/-1.1	71.2	+/-1.7	0.35	+/-0.02	87.0	+/-3.4
				PSIpred	75.2	+/-1.3	71.1	+/-1.8	0.37	+/-0.02	83.0	+/-3.8
				SAM-T99sec	74.3	+/-1.1	68.9	+/-1.7	0.34	+/-0.02	88.0	+/-3.3
common 5	100	dssp	2	PHDpsi	72.6	+/-1.2	67.3	+/-1.7	0.32	+/-0.02	84.0	+/-3.7
common 5	100	dssp	3	PHD	69.5	+/-1.3	64.7	+/-1.8	0.28	+/-0.02	81.0	+/-3.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	161	dssp	1	PROFsec	75.1	+/-1.0	72.0	+/-1.3	0.36	+/-0.01	85.7	+/-2.8
				PSIpred	75.3	+/-1.0	72.5	+/-1.4	0.37	+/-0.01	83.2	+/-3.0
common 6	161	dssp	2	PHDpsi	72.2	+/-1.0	68.0	+/-1.4	0.32	+/-0.01	81.4	+/-3.1
common 6	161	dssp	3	PHD	69.5	+/-1.1	65.7	+/-1.4	0.28	+/-0.01	78.3	+/-3.3